DRSC/TRiP Functional Genomics Resources

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Protein Alignment nAChRbeta1 and nAChRalpha1

DIOPT Version :9

Sequence 1:NP_523927.2 Gene:nAChRbeta1 / 38545 FlyBaseID:FBgn0000038 Length:521 Species:Drosophila melanogaster
Sequence 2:NP_001262916.1 Gene:nAChRalpha1 / 42918 FlyBaseID:FBgn0000036 Length:597 Species:Drosophila melanogaster


Alignment Length:558 Identity:239/558 - (42%)
Similarity:330/558 - (59%) Gaps:53/558 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 SWLLCSILVLVAFSLVS-ASEDEERLVRDLFRGYNKLIRPVQNMTQKVGVRFGLAFVQLINVNEK 70
            |.|..::.:.:.|:... |:.|.:||..||...||:|||||.|.:.::.|:.||...|||:||.|
  Fly     3 SVLFAAVFIALHFATGGLANPDAKRLYDDLLSNYNRLIRPVGNNSDRLTVKMGLRLSQLIDVNLK 67

  Fly    71 NQIMKSNVWLRLVWYDYQLQWDEADYGGIGVLRLPPDKVWKPDIVLFNNADGNYEVRYKSNVLIY 135
            ||||.:|||:...|.||:|:|:..||||:..|.:|.:.:|.|||||:|||||||||...:..:::
  Fly    68 NQIMTTNVWVEQEWNDYKLKWNPDDYGGVDTLHVPSEHIWLPDIVLYNNADGNYEVTIMTKAILH 132

  Fly   136 PTGEVLWVPPAIYQSSCTIDVTYFPFDQQTCIMKFGSWTFNGDQVSL----ALYNNKNF---VDL 193
            .||:|:|.|||||:|.|.|||.|||||:|||.|||||||::|..|.|    ...::.|.   :||
  Fly   133 HTGKVVWKPPAIYKSFCEIDVEYFPFDEQTCFMKFGSWTYDGYMVDLRHLKQTADSDNIEVGIDL 197

  Fly   194 SDYWKSGTWDIIEVPAYLNVYEGDSNHPTETDITFYIIIRRKTLFYTVNLILPTVLISFLCVLVF 258
            .||:.|..|||:.|||..|............||.|.:.:||||||||||||:|.|.||||.||||
  Fly   198 QDYYISVEWDIMRVPAVRNEKFYSCCEEPYLDIVFNLTLRRKTLFYTVNLIIPCVGISFLSVLVF 262

  Fly   259 YLPAEAGEKVTLGISILLSLVVFLLLVSKILPPTSLVLPLIAKYLLFTFIMNTVSILVTVIIINW 323
            |||:::|||::|.|||||||.||.||:::|:|||||.:||:.||||||.::.|:|::||:.::|.
  Fly   263 YLPSDSGEKISLCISILLSLTVFFLLLAEIIPPTSLTVPLLGKYLLFTMMLVTLSVVVTIAVLNV 327

  Fly   324 NFRGPRTHRMPMYIRSIFLHYLPAFLFMKRPRKTRLRWMMEMPGMSMPA-------HPHP----- 376
            |||.|.||||..:::.:|:..||..|.::||:|       |.|....|.       |..|     
  Fly   328 NFRSPVTHRMAPWVQRLFIQILPKLLCIERPKK-------EEPEEDQPPEVLTDVYHLPPDVDKF 385

  Fly   377 ----------SYGSPAELPKH---ISAIGGKQSK--MEVMELSDLHHPNCKINRKVNSGGELGLG 426
                      .||.||....|   ::|.||..:.  .|....|.|..|....:....||....:.
  Fly   386 VNYDSKRFSGDYGIPALPASHRFDLAAAGGISAHCFAEPPLPSSLPLPGADDDLFSPSGLNGDIS 450

  Fly   427 DGCRRESESSDSILLSP--------EASKATEAVEFIAEHLRNEDLYIQTREDWKYVAMVIDRLQ 483
            .||...:.::.:..|||        |..|..|...|||:|::|:|.:....|||||||||:||:.
  Fly   451 PGCCPAAAAAAAADLSPTFEKPYAREMEKTIEGSRFIAQHVKNKDKFESVEEDWKYVAMVLDRMF 515

  Fly   484 LYIFFIVTTAGTVGILMDAPHIFEYVDQDRIIEIYRGK 521
            |:||.|....||..|::.||.::   ||.:.|:|...|
  Fly   516 LWIFAIACVVGTALIILQAPSLY---DQSQPIDILYSK 550

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nAChRbeta1NP_523927.2 LIC 8..500 CDD:273305 231/534 (43%)
Neur_chan_LBD 28..236 CDD:280998 104/214 (49%)
Neur_chan_memb 243..498 CDD:280999 114/289 (39%)
nAChRalpha1NP_001262916.1 Neur_chan_LBD 25..240 CDD:280998 104/214 (49%)
LIC 27..530 CDD:273305 226/509 (44%)
Neur_chan_memb 247..530 CDD:280999 114/289 (39%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45447360
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3645
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D188416at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR18945
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
54.850

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