DRSC/TRiP Functional Genomics Resources

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Protein Alignment nAChRbeta1 and GluClalpha

DIOPT Version :9

Sequence 1:NP_523927.2 Gene:nAChRbeta1 / 38545 FlyBaseID:FBgn0000038 Length:521 Species:Drosophila melanogaster
Sequence 2:NP_001287408.1 Gene:GluClalpha / 42350 FlyBaseID:FBgn0024963 Length:463 Species:Drosophila melanogaster


Alignment Length:464 Identity:95/464 - (20%)
Similarity:174/464 - (37%) Gaps:123/464 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly    15 VLVAFSLVSAS---------EDEERLVRDLFRG---YNKLIRP--VQNMTQKVGVRFGLAFVQLI 65
            :|...||.|||         .::|:.|.|...|   |:..|||  :........||..:....:.
  Fly    10 ILYFASLCSASLANNAKINFREKEKKVLDQILGAGKYDARIRPSGINGTDGPAVVRVNIFVRSIS 74

  Fly    66 NVNEKNQIMKSNVWLRLVWYDYQLQWDEADYGGIGVLRL-PPDKVWKPDIVLFNNADGNYEVRYK 129
            .:::........:..|..|.|.:|::|:.. |.:..|.| ..::||.||:...|..:|::.....
  Fly    75 KIDDVTMEYSVQLTFREQWTDERLKFDDIQ-GRLKYLTLTEANRVWMPDLFFSNEKEGHFHNIIM 138

  Fly   130 SNVL--IYPTGEVLWVPPAIYQSSCTIDVTYFPFDQQTCIMKFGS--WTFNGDQVSLALYNNKNF 190
            .||.  |:|.|.||:........:|.:::..:|.|:|.|.::..|  ||.|              
  Fly   139 PNVYIRIFPNGSVLYSIRISLTLACPMNLKLYPLDRQICSLRMASYGWTTN-------------- 189

  Fly   191 VDLSDYWKSGTWDIIEV-----------PAYLNVYEGDSNHPTETD----ITFYIIIRRKTLFYT 240
             ||...||.|  |.::|           ..:|..|   .|..|.|.    :...::.:|:..:|.
  Fly   190 -DLVFLWKEG--DPVQVVKNLHLPRFTLEKFLTDY---CNSKTNTGEYSCLKVDLLFKREFSYYL 248

  Fly   241 VNLILPTVLISFLCVLVFYL-----PAEAGEKVTLGISILLSLVVFLLLVSKILPPTSLVLPL-I 299
            :.:.:|..::..:..:.|:|     ||    :|:||::.||::......::..|||.|....: :
  Fly   249 IQIYIPCCMLVIVSWVSFWLDQGAVPA----RVSLGVTTLLTMATQTSGINASLPPVSYTKAIDV 309

  Fly   300 AKYLLFTFIMNTVSILVTVIIINWNFRGPRTHRMPMYIRSIFLHYLPAFLFMKRPRKTRLRWMME 364
            ...:..||:...   |:...::|:..|. .:::..|:..:           ||:.|:...:..::
  Fly   310 WTGVCLTFVFGA---LLEFALVNYASRS-GSNKANMHKEN-----------MKKKRRDLEQASLD 359

  Fly   365 MP----------------------GMSMPAHPHPSYGSPAELPKHISAIGGKQSKMEVMELSDLH 407
            ..                      |...|...||  |.|..|.|.:..              ::|
  Fly   360 AASDLLDTDSNATFAMASQFARGGGQQKPLVRHP--GDPLALEKRLQC--------------EVH 408

  Fly   408 -----HPNC 411
                 .|||
  Fly   409 MQAPKRPNC 417

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nAChRbeta1NP_523927.2 LIC 8..500 CDD:273305 95/464 (20%)
Neur_chan_LBD 28..236 CDD:280998 53/232 (23%)
Neur_chan_memb 243..498 CDD:280999 35/202 (17%)
GluClalphaNP_001287408.1 LIC 3..455 CDD:273305 95/464 (20%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45447361
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR18945
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
22.030

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