DRSC/TRiP Functional Genomics Resources

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Protein Alignment nAChRbeta1 and pHCl-1

DIOPT Version :9

Sequence 1:NP_523927.2 Gene:nAChRbeta1 / 38545 FlyBaseID:FBgn0000038 Length:521 Species:Drosophila melanogaster
Sequence 2:NP_001261898.1 Gene:pHCl-1 / 39730 FlyBaseID:FBgn0264908 Length:978 Species:Drosophila melanogaster


Alignment Length:513 Identity:99/513 - (19%)
Similarity:178/513 - (34%) Gaps:143/513 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly    24 ASEDEERLVRDLF---RGYNK-LIRPV-----------------QNMTQ-----KVGVRFGLAFV 62
            :|.|:|  :.||.   :.|:| |:.||                 ||..:     .:.|...:..:
  Fly   334 SSSDKE--ILDLLLEKKRYDKRLLPPVNDEDFCCGLQSPDMATNQNARRPHNRGTLTVNVNVLLL 396

  Fly    63 QLINVNEKNQIMKSNVWLRLVWYDYQLQW-DEADYGGIGVLRLPPDKVWKPDIVLFNNADGNYEV 126
            .|.:.:|.:...:....|...|.|.:||: :::.|..:..|. ..|.:|.||.....:.|     
  Fly   397 SLASPDESSLKYEVEFLLNQQWNDPRLQYGNKSHYDFLNALH-HHDSIWTPDTYFIMHGD----- 455

  Fly   127 RYKSNVL-------IYPTGEVLWVPPAIYQSSCTIDVTYFPFDQQTCIMKFGSWTFNGDQVSLAL 184
             :|..::       |:..|.:.:........||...:..||||...|.....|.::...|:....
  Fly   456 -FKDPIIPMHFALRIFRNGTITYAMRRHLILSCQGSLHIFPFDDPKCSFSMESISYEEAQIKYVW 519

  Fly   185 YNNKNFVDLSDYWKSGTWDIIEVPAYL----------NVYEGDSNHPTETDITFYIIIRRKTLFY 239
            .|:::.:..|.       .:..:.|||          |.:.|:.: ..:.::||    .|...:|
  Fly   520 KNDEDTLRKSP-------SLTTLNAYLIKNQTTACDQNSWRGNYS-CLQVELTF----TRDRAYY 572

  Fly   240 TVNLILPTVLISFLCVLVFYL-----PAEAGEKVTLGISILLSLVVFLLLVSKILPPTS-LVLPL 298
            ...:.:|.:::.....:.|:|     ||    :|.:|::.:|:...........||..| |....
  Fly   573 FTTVFIPGIILVTSSFITFWLEWNAVPA----RVMIGVTTMLNFFTTSNGFRSTLPVVSNLTAMN 633

  Fly   299 IAKYLLFTFIMNTVSILVTVIIINWNFR-------------GPRTHRMPMYIRSIFLHYLPAFLF 350
            :...:...||   .:.|:..:.:|:..|             .|.|.|:|..:..|       .:.
  Fly   634 VWDGVCMCFI---YASLLEFVCVNYVGRKRPLHNVVYRPGENPVTQRLPAVLSRI-------GVI 688

  Fly   351 MKRPRKTRLRWMMEMPGMSMPAHPHP-SYGSPAEL-------------PKHISAIGGKQSKMEVM 401
            :..|    |......|.|||.....| |.|:||..             |:..  .||.      |
  Fly   689 LASP----LASAAATPAMSMMGGATPMSSGTPAASSSVATPGTPRITDPEEF--FGGG------M 741

  Fly   402 ELSDLHHPNCKINRKVNSGGELGL------GDGCRRESESSDSILLSPEAS-KATEAV 452
            ...:.|            ||.:|.      ....:|::..|.|..:||..| :.||.:
  Fly   742 RWQEAH------------GGIIGAAVQNLRARSIKRKAARSPSTSISPHPSGRPTEHI 787

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nAChRbeta1NP_523927.2 LIC 8..500 CDD:273305 99/513 (19%)
Neur_chan_LBD 28..236 CDD:280998 47/251 (19%)
Neur_chan_memb 243..498 CDD:280999 49/250 (20%)
pHCl-1NP_001261898.1 Neur_chan_LBD 338..566 CDD:280998 46/248 (19%)
Neur_chan_memb 578..>682 CDD:280999 21/110 (19%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR18945
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
11.100

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