Sequence 1: | NP_523927.2 | Gene: | nAChRbeta1 / 38545 | FlyBaseID: | FBgn0000038 | Length: | 521 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_001261617.1 | Gene: | Rdl / 39054 | FlyBaseID: | FBgn0004244 | Length: | 608 | Species: | Drosophila melanogaster |
Alignment Length: | 496 | Identity: | 95/496 - (19%) |
---|---|---|---|
Similarity: | 177/496 - (35%) | Gaps: | 124/496 - (25%) |
- Green bases have known domain annotations that are detailed below.
Fly 10 LCSILVLVAFSLVSASEDEERL--------------------VRDLFR-GYNKLIRP-VQNMTQK 52
Fly 53 VGVRFGLAFVQLINVNEKNQIMKSNVWLRLVWYDYQLQWDEADYGGIGVLRLPPD---KVWKPDI 114
Fly 115 VLFNNADGNYEVRYKSN--VLIYPTGEVLWVPPAIYQSSCTIDVTYFPFDQQTCIMKFGSWTFNG 177
Fly 178 DQVSLALYNNKNFVDLSDYWKSGTWDI-----IEVPAYLNVYEGDSNHPTETDIT--------FY 229
Fly 230 IIIRRKTLFYTVNLILPTVLISFLCVLVFYLPAEA-GEKVTLGISILLSLVVFLLLVSKILPPTS 293
Fly 294 LVLPLIAKYLLFTFIMNTVSILVTVIIINWNFRGPRTHRMPMYIRSIFLHYLPAFLFMKRPRKTR 358
Fly 359 LRWM----------MEMPGMS-MPAHPHP--SYGSPAELPKHISAIGGKQSKMEVMELSDLHHPN 410
Fly 411 CKINRKV--NSGGELGLGDGCRRESESSDSILLSPEASKAT 449 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
nAChRbeta1 | NP_523927.2 | LIC | 8..500 | CDD:273305 | 95/496 (19%) |
Neur_chan_LBD | 28..236 | CDD:280998 | 44/247 (18%) | ||
Neur_chan_memb | 243..498 | CDD:280999 | 47/223 (21%) | ||
Rdl | NP_001261617.1 | LGIC_ECD_GABAR_RDL-like | 83..266 | CDD:349809 | 36/201 (18%) |
Neur_chan_memb | 274..588 | CDD:397193 | 47/223 (21%) |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 1 | 0.930 | - | - | C45447362 | |
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
Isobase | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 0 | 0.000 | Not matched by this tool. | |||
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 1 | 1.100 | - | - | P | PTHR18945 |
Phylome | 0 | 0.000 | Not matched by this tool. | |||
RoundUp | 0 | 0.000 | Not matched by this tool. | |||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
2 | 2.030 |