DRSC/TRiP Functional Genomics Resources

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Protein Alignment nAChRbeta1 and Rdl

DIOPT Version :9

Sequence 1:NP_523927.2 Gene:nAChRbeta1 / 38545 FlyBaseID:FBgn0000038 Length:521 Species:Drosophila melanogaster
Sequence 2:NP_001261617.1 Gene:Rdl / 39054 FlyBaseID:FBgn0004244 Length:608 Species:Drosophila melanogaster


Alignment Length:496 Identity:95/496 - (19%)
Similarity:177/496 - (35%) Gaps:124/496 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly    10 LCSILVLVAFSLVSASEDEERL--------------------VRDLFR-GYNKLIRP-VQNMTQK 52
            |.:|.:.:..:|::.....:|:                    :.|.|. .|:|.:|| ......:
  Fly    20 LLTIWLAINMALIAQETGHKRIHTVQAATGGGSMLGDVNISAILDSFSVSYDKRVRPNYGGPPVE 84

  Fly    53 VGVRFGLAFVQLINVNEKNQIMKSNVWLRLVWYDYQLQWDEADYGGIGVLRLPPD---KVWKPDI 114
            |||.  :..:.:.:::|.......:.:.|..|.|.:|.:.:..  |:..|.:..:   .:|.||.
  Fly    85 VGVT--MYVLSISSLSEVKMDFTLDFYFRQFWTDPRLAYRKRP--GVETLSVGSEFIKNIWVPDT 145

  Fly   115 VLFNNADGNYEVRYKSN--VLIYPTGEVLWVPPAIYQSSCTIDVTYFPFDQQTCIMKFGSWTFNG 177
            ...|.....:.:...||  :.::.:|.:.........:||.:::.|||.|:|.|.::..|:.:  
  Fly   146 FFVNEKQSYFHIATTSNEFIRVHHSGSITRSIRLTITASCPMNLQYFPMDRQLCHIEIESFGY-- 208

  Fly   178 DQVSLALYNNKNFVDLSDYWKSGTWDI-----IEVPAYLNVYEGDSNHPTETDIT--------FY 229
                       ...|:..:|:.|...:     :|:|.:..:  |.....||.::|        ..
  Fly   209 -----------TMRDIRYFWRDGLSSVGMSSEVELPQFRVL--GHRQRATEINLTTGNYSRLACE 260

  Fly   230 IIIRRKTLFYTVNLILPTVLISFLCVLVFYLPAEA-GEKVTLGISILLSLVVFLLLVSKILPPTS 293
            |...|...:|.:.:.:|:.||..:..:.|:|...| ..:|.||::.:|::...:...:..||..|
  Fly   261 IQFVRSMGYYLIQIYIPSGLIVIISWVSFWLNRNATPARVALGVTTVLTMTTLMSSTNAALPKIS 325

  Fly   294 LVLPLIAKYLLFTFIMNTVSILVTVIIINWNFRGPRTHRMPMYIRSIFLHYLPAFLFMKRPRKTR 358
            .| ..|..||...|:|...|:                           |.|.......||.:..:
  Fly   326 YV-KSIDVYLGTCFVMVFASL---------------------------LEYATVGYMAKRIQMRK 362

  Fly   359 LRWM----------MEMPGMS-MPAHPHP--SYGSPAELPKHISAIGGKQSKMEVMELSDLHHPN 410
            .|:|          .::.|.: ..|:|:|  :.|.|..:.......||               |.
  Fly   363 QRFMAIQKIAEQKKQQLDGANQQQANPNPNANVGGPGGVGVGPGGPGG---------------PG 412

  Fly   411 CKINRKV--NSGGELGLGDGCRRESESSDSILLSPEASKAT 449
            ..:|..|  ..|.|.|.|.|....|..      .|.|.|.|
  Fly   413 GGVNVGVGMGMGPEHGHGHGHHAHSHG------HPHAPKQT 447

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nAChRbeta1NP_523927.2 LIC 8..500 CDD:273305 95/496 (19%)
Neur_chan_LBD 28..236 CDD:280998 44/247 (18%)
Neur_chan_memb 243..498 CDD:280999 47/223 (21%)
RdlNP_001261617.1 LGIC_ECD_GABAR_RDL-like 83..266 CDD:349809 36/201 (18%)
Neur_chan_memb 274..588 CDD:397193 47/223 (21%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45447362
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR18945
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
22.030

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