DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment nAChRbeta1 and nAChRbeta3

DIOPT Version :9

Sequence 1:NP_523927.2 Gene:nAChRbeta1 / 38545 FlyBaseID:FBgn0000038 Length:521 Species:Drosophila melanogaster
Sequence 2:NP_525098.1 Gene:nAChRbeta3 / 33228 FlyBaseID:FBgn0031261 Length:441 Species:Drosophila melanogaster


Alignment Length:396 Identity:94/396 - (23%)
Similarity:172/396 - (43%) Gaps:60/396 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly    29 ERLVRDLFRGYNKLIRPV-QNMTQKVGVRFGLAFVQLINVNEKNQIMKSNVWLRLVWYDYQLQWD 92
            :||...||..|:..::|| |.....|.:..   .|..|:::|.|..:.::.||.|.|.|.:..|.
  Fly    52 DRLHAGLFTNYDSDVQPVFQGTPTNVSLEM---VVTYIDIDELNGKLTTHCWLNLRWRDEERVWQ 113

  Fly    93 EADYGGIGVLRLPPDKVWKPDIVLFNNADGNYEVRYKSNVLIYPTGEVLWVPPAIYQSSCTIDVT 157
            .:.|..|..:.|...:||.|.|.|||..:|.  :..::.|.:...|...|:|||:|.:.|.:::.
  Fly   114 PSQYDNITQITLKSSEVWTPQITLFNGDEGG--LMAETQVTLSHDGHFRWMPPAVYTAYCELNML 176

  Fly   158 YFPFDQQTCIMKFGSW----------TFNGDQVSLALYNNKNFVDLSDYWKSGTWDIIEVPAYL- 211
            .:|.|:|:|.:|.|||          |..|:.           :|..|..:|..|:|::..|:. 
  Fly   177 NWPHDKQSCKLKIGSWGLKVVLPENGTARGES-----------LDHDDLVQSPEWEIVDSRAHFV 230

  Fly   212 -NVYEGDSNHPTETDITFYIIIRRKTLFYTVNLILPTVLISFLCVLVFYLPAE-AGEKVTLGISI 274
             ..|.|        .:.:.:..:|::..||..:..|...|..|.:..|:||.. .|||:.:...:
  Fly   231 SQDYYG--------YMEYTLTAQRRSSMYTAVIYTPASCIVILALSAFWLPPHMGGEKIMINGLL 287

  Fly   275 LLSLVVFLLLVSKILPPTSLVLPLIAKYLLFTFIMNTVSILVTVIIINWNFRGPRTHRMPMYIRS 339
            ::.:..||:..:::||..|...||:..:...:.:..:||.:|.|::: :...|....|:|..:|.
  Fly   288 IIVIAAFLMYFAQLLPVLSNNTPLVVIFYSTSLLYLSVSTIVEVLVL-YLATGKHKRRLPEALRK 351

  Fly   340 IFLHYLPAFLFM--------KRPRKTRLRWMMEMPGMSMPAHPHPSYGSPAELP---KHISAIGG 393
            :...:|..:|.:        .:..||:          .|..||:.........|   .|....|.
  Fly   352 LLHGHLGTWLLLSVFSTTGESQAEKTK----------EMDEHPYEEADEQESSPLGINHTEVPGA 406

  Fly   394 KQSKME 399
            |.::.:
  Fly   407 KANQFD 412

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nAChRbeta1NP_523927.2 LIC 8..500 CDD:273305 94/396 (24%)
Neur_chan_LBD 28..236 CDD:280998 57/219 (26%)
Neur_chan_memb 243..498 CDD:280999 35/169 (21%)
nAChRbeta3NP_525098.1 LIC 39..437 CDD:273305 94/396 (24%)
Neur_chan_LBD 52..247 CDD:280998 56/218 (26%)
Neur_chan_memb 255..434 CDD:280999 35/169 (21%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45447343
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3645
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR18945
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
43.840

Return to query results.
Submit another query.