Sequence 1: | NP_523927.2 | Gene: | nAChRbeta1 / 38545 | FlyBaseID: | FBgn0000038 | Length: | 521 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_062018.1 | Gene: | Chrng / 25753 | RGDID: | 2354 | Length: | 519 | Species: | Rattus norvegicus |
Alignment Length: | 520 | Identity: | 176/520 - (33%) |
---|---|---|---|
Similarity: | 273/520 - (52%) | Gaps: | 62/520 - (11%) |
- Green bases have known domain annotations that are detailed below.
Fly 13 ILVLVAFSLVSASED-EERLVRDLFRGYNKLIRPVQNMTQKVGVRFGLAFVQLINVNEKNQIMKS 76
Fly 77 NVWLRLVWYDYQLQWDEADYGGIGVLRLPPDKVWKPDIVLFNNADGNYEVRYKSNVLIYPTGEVL 141
Fly 142 WVPPAIYQSSCTIDVTYFPFDQQTCIMKFGSWTFNGDQVSLALYNNKN------FVDLSDYWKSG 200
Fly 201 TWDIIEVPAYLNVYEGDSNHPTE----TDITFYIIIRRKTLFYTVNLILPTVLISFLCVLVFYLP 261
Fly 262 AEA-GEKVTLGISILLSLVVFLLLVSKILPPTSLVLPLIAKYLLFTFIMNTVSILVTVIIINWNF 325
Fly 326 RGPRTHRMPMYIRSIFLHYLPAFLFMKRPRKTRLRWMMEMPGMSMPAHPHPSYGSPAEL-PKHIS 389
Fly 390 AIGGKQSKMEVM--ELSDLHHPNCK--------------INRKVNSGGELGLGDGCRRESESSDS 438
Fly 439 I-LLSPEASKATEAVEFIAEHLRNEDLYIQTREDWKYVAMVIDRLQLYIFFIVTTAGTVGILMDA 502
Fly 503 502 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
nAChRbeta1 | NP_523927.2 | LIC | 8..500 | CDD:273305 | 175/516 (34%) |
Neur_chan_LBD | 28..236 | CDD:280998 | 87/217 (40%) | ||
Neur_chan_memb | 243..498 | CDD:280999 | 76/273 (28%) | ||
Chrng | NP_062018.1 | LIC | 23..497 | CDD:273305 | 170/505 (34%) |
Neur_chan_LBD | 26..241 | CDD:280998 | 87/217 (40%) | ||
Neur_chan_memb | 248..494 | CDD:280999 | 77/274 (28%) |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 0 | 0.000 | Not matched by this tool. | |||
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 0 | 0.000 | Not matched by this tool. | |||
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 1 | 0.910 | - | - | ||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 1 | 1.000 | - | - | ||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
2 | 1.910 |