DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment nAChRbeta1 and Chrng

DIOPT Version :9

Sequence 1:NP_523927.2 Gene:nAChRbeta1 / 38545 FlyBaseID:FBgn0000038 Length:521 Species:Drosophila melanogaster
Sequence 2:NP_062018.1 Gene:Chrng / 25753 RGDID:2354 Length:519 Species:Rattus norvegicus


Alignment Length:520 Identity:176/520 - (33%)
Similarity:273/520 - (52%) Gaps:62/520 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly    13 ILVLVAFSLVSASED-EERLVRDLFRGYNKLIRPVQNMTQKVGVRFGLAFVQLINVNEKNQIMKS 76
            :|:|:|..|.:.|.: ||||:.||.|.|:..:||.:..:..|.|...|....||::||:.:.:.:
  Rat    10 LLLLLATCLGAQSRNQEERLLADLMRNYDPHLRPAERDSDVVNVSLKLTLTNLISLNEREEALTT 74

  Fly    77 NVWLRLVWYDYQLQWDEADYGGIGVLRLPPDKVWKPDIVLFNNADGNYEVRYKSNVLIYPTGEVL 141
            |||:.:.|.||:|:||..||.|:.:||:|...||:|||||.||.||.:||....|||:.|.|.:.
  Rat    75 NVWIEMQWCDYRLRWDPKDYEGLWILRVPSTMVWQPDIVLGNNVDGVFEVALYCNVLVSPDGCIY 139

  Fly   142 WVPPAIYQSSCTIDVTYFPFDQQTCIMKFGSWTFNGDQVSLALYNNKN------FVDLSDYWKSG 200
            |:||||::|||:|.|||||||.|.|.:.|.|.|::..:::|.|.....      |:|...:.::|
  Rat   140 WLPPAIFRSSCSISVTYFPFDWQNCSLVFQSQTYSTSEINLQLSQEDGQAIEWIFIDPEAFTENG 204

  Fly   201 TWDIIEVPAYLNVYEGDSNHPTE----TDITFYIIIRRKTLFYTVNLILPTVLISFLCVLVFYLP 261
            .|.|...||.:.:   |...|.|    ..:.||::|:||.|||.:|:|:|.||||.:.:|:::||
  Rat   205 EWAIRHRPAKMLL---DPVTPAEEAGHQKVVFYLLIQRKPLFYVINIIVPCVLISSVAILIYFLP 266

  Fly   262 AEA-GEKVTLGISILLSLVVFLLLVSKILPPTSLVLPLIAKYLLFTFIMNTVSILVTVIIINWNF 325
            |:| |:|.|:..::||:..|||.||:|.:|.||..:|||:|||.|..::..:.::.:|:::|.:.
  Rat   267 AKAGGQKCTVATNVLLAQTVFLFLVAKKVPETSQAVPLISKYLTFLMVVTILIVVNSVVVLNVSL 331

  Fly   326 RGPRTHRMPMYIRSIFLHYLPAFLFMKRPRKTRLRWMMEMPGMSMPAHPHPSYGSPAEL-PKHIS 389
            |.|.||.|...:|.:||..||..|.|                     |.||.  :||.: ...:.
  Rat   332 RSPHTHSMARGVRKVFLRLLPQLLRM---------------------HVHPR--APAAVQDARLR 373

  Fly   390 AIGGKQSKMEVM--ELSDLHHPNCK--------------INRKVNSGGELGLGDGCRRESESSDS 438
            ...|..|...:|  |..||..|..:              :..|:.:|.|:      |:..|...|
  Rat   374 LQNGSSSGWPIMTREEGDLCLPRSELLFRQRQRNGLVQAVLEKLENGPEM------RQSQEFCGS 432

  Fly   439 I-LLSPEASKATEAVEFIAEHLRNEDLYIQTREDWKYVAMVIDRLQLYIFFIVTTAGTVGILMDA 502
            : ..||......:|...:|.....:..:....|:|..|..|:||:.......:...||.||.:.|
  Rat   433 LKQASPAIQACVDACNLMARARHQQSHFDSGNEEWLLVGRVLDRVCFLAMLSLFICGTAGIFLMA 497

  Fly   503  502
              Rat   498  497

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nAChRbeta1NP_523927.2 LIC 8..500 CDD:273305 175/516 (34%)
Neur_chan_LBD 28..236 CDD:280998 87/217 (40%)
Neur_chan_memb 243..498 CDD:280999 76/273 (28%)
ChrngNP_062018.1 LIC 23..497 CDD:273305 170/505 (34%)
Neur_chan_LBD 26..241 CDD:280998 87/217 (40%)
Neur_chan_memb 248..494 CDD:280999 77/274 (28%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
21.910

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