Sequence 1: | NP_523927.2 | Gene: | nAChRbeta1 / 38545 | FlyBaseID: | FBgn0000038 | Length: | 521 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_036964.3 | Gene: | Chrna7 / 25302 | RGDID: | 2348 | Length: | 502 | Species: | Rattus norvegicus |
Alignment Length: | 536 | Identity: | 197/536 - (36%) |
---|---|---|---|
Similarity: | 304/536 - (56%) | Gaps: | 75/536 - (13%) |
- Green bases have known domain annotations that are detailed below.
Fly 8 WL-LCSILVLVAFSLVSASEDEERLVRDLFRGYNKLIRPVQNMTQKVGVRFGLAFVQLINVNEKN 71
Fly 72 QIMKSNVWLRLVWYDYQLQWDEADYGGIGVLRLPPDKVWKPDIVLFNNADGNYEVRYKSNVLIYP 136
Fly 137 TGEVLWVPPAIYQSSCTIDVTYFPFDQQTCIMKFGSWTFNGDQVSLALYNNKNFVDLSDYWKSGT 201
Fly 202 WDIIEVPAYLN--VYE-GDSNHPTETDITFYIIIRRKTLFYTVNLILPTVLISFLCVLVFYLPAE 263
Fly 264 AGEKVTLGISILLSLVVFLLLVSKILPPTSLVLPLIAKYLLFTFIMNTVSILVTVIIINWNFRGP 328
Fly 329 RTHRMPMYIRSIFLHYLPAFLFMKRPRKTRLRWMMEMPGMSMPAHPHPSYGSPAELPKHISAIGG 393
Fly 394 KQSKMEVMELSDLHHPNCKINRKVNSGGEL------GL-----------GDGCRRE--SESSDSI 439
Fly 440 LL--------SPEASKATEAVEFIAEHLRNEDLYIQTREDWKYVAMVIDRLQLYIFFIVTTAGTV 496
Fly 497 GILMDAPHIFEYVDQD 512 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
nAChRbeta1 | NP_523927.2 | LIC | 8..500 | CDD:273305 | 190/522 (36%) |
Neur_chan_LBD | 28..236 | CDD:280998 | 82/210 (39%) | ||
Neur_chan_memb | 243..498 | CDD:280999 | 96/281 (34%) | ||
Chrna7 | NP_036964.3 | LIC | 4..490 | CDD:273305 | 192/524 (37%) |
Neur_chan_LBD | 26..230 | CDD:280998 | 82/210 (39%) | ||
Neur_chan_memb | 237..486 | CDD:280999 | 96/281 (34%) | ||
Essential for TMEM35A/NACHO-mediated proper subunit assembly and trafficking to cell membrane. /evidence=ECO:0000250|UniProtKB:P49582 | 260..267 | 4/6 (67%) |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 0 | 0.000 | Not matched by this tool. | |||
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 0 | 0.000 | Not matched by this tool. | |||
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 1 | 0.910 | - | - | ||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 1 | 1.000 | - | - | ||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
2 | 1.910 |