Sequence 1: | NP_523927.2 | Gene: | nAChRbeta1 / 38545 | FlyBaseID: | FBgn0000038 | Length: | 521 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_001382047.1 | Gene: | Chrnb1 / 24261 | RGDID: | 2349 | Length: | 504 | Species: | Rattus norvegicus |
Alignment Length: | 508 | Identity: | 191/508 - (37%) |
---|---|---|---|
Similarity: | 291/508 - (57%) | Gaps: | 64/508 - (12%) |
- Green bases have known domain annotations that are detailed below.
Fly 25 SEDEERLVRDLFRGYNKLIRPVQNMTQKVGVRFGLAFVQLINV---NEKNQIMKSNVWLRLVWYD 86
Fly 87 YQLQWDEADYGGIGVLRLPPDKVWKPDIVLFNNADGNYEVRYKSNVLIYPTGEVLWVPPAIYQSS 151
Fly 152 CTIDVTYFPFDQQTCIMKFGSWTFNGDQVSL-------ALYNNKNFVDLSDYWKSGTWDIIEVPA 209
Fly 210 YLNVYEGDSNHPTE---TDITFYIIIRRKTLFYTVNLILPTVLISFLCVLVFYLPAEAGEKVTLG 271
Fly 272 ISILLSLVVFLLLVSKILPPTSLVLPLIAKYLLFTFIMNTVSILVTVIIINWNFRGPRTHRMPMY 336
Fly 337 IRSIFLHYLPAFLFMKRPRKTRLRWMMEMPGMSMPAHPHPSYGSPAELPKHISAIGGKQSKMEVM 401
Fly 402 ELSDLHHPNC-----KINRKVNSGGELGLGDGCRRESESSD----------SILLSPEASKATEA 451
Fly 452 VEFIAEHLRNEDLYIQTREDWKYVAMVIDRLQLYIFFIVTTAGTVGILMDAPH 504 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
nAChRbeta1 | NP_523927.2 | LIC | 8..500 | CDD:273305 | 189/502 (38%) |
Neur_chan_LBD | 28..236 | CDD:280998 | 88/220 (40%) | ||
Neur_chan_memb | 243..498 | CDD:280999 | 92/269 (34%) | ||
Chrnb1 | NP_001382047.1 | LGIC_ECD_nAChR_B1 | 27..248 | CDD:349825 | 88/220 (40%) |
Neur_chan_memb | 255..490 | CDD:397193 | 92/270 (34%) | ||
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite | 365..384 | 9/29 (31%) |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 1 | 0.900 | - | - | E1_KOG3645 | |
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 0 | 0.000 | Not matched by this tool. | |||
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 1 | 0.910 | - | - | ||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 1 | 1.000 | - | - | ||
TreeFam | 1 | 0.960 | - | - | ||
4 | 3.770 |