Sequence 1: | NP_523927.2 | Gene: | nAChRbeta1 / 38545 | FlyBaseID: | FBgn0000038 | Length: | 521 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_502905.2 | Gene: | lgc-19 / 190895 | WormBaseID: | WBGene00013655 | Length: | 400 | Species: | Caenorhabditis elegans |
Alignment Length: | 365 | Identity: | 83/365 - (22%) |
---|---|---|---|
Similarity: | 166/365 - (45%) | Gaps: | 61/365 - (16%) |
- Green bases have known domain annotations that are detailed below.
Fly 28 EERLVRDLFRGYNKLIRPVQNMTQKVGVRFG--------------LAFVQLINVNEKNQIMKSNV 78
Fly 79 WLRLV--WYDYQLQWDEADYGGIGVLRLPPDKVWKPDIVLFNNADGNYEVRYKSN----VLIYPT 137
Fly 138 GEVLWVPPAI-YQSSCTIDVTYFPFDQQTCIMKFGSWTFNGDQVSLALYNNKNFVDLSD--YWK- 198
Fly 199 --SGTWDIIEVPAYLNVYEGDSNHPTETDITFYIIIRRKTLFYTVNLILPTVLISFLCVL-VFYL 260
Fly 261 PAEAGEKVTLGISILLSLVVFLLLVSKILPPTSLVLPLIAKYLLFTFIMNTVSI-LVTVIIINWN 324
Fly 325 FRGPRTHRMPMYIRSIFLHYLPAFLFMKRPRKTRLRWMME 364 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
nAChRbeta1 | NP_523927.2 | LIC | 8..500 | CDD:273305 | 83/365 (23%) |
Neur_chan_LBD | 28..236 | CDD:280998 | 57/233 (24%) | ||
Neur_chan_memb | 243..498 | CDD:280999 | 24/124 (19%) | ||
lgc-19 | NP_502905.2 | LGIC_ECD_cation | 75..257 | CDD:349790 | 48/190 (25%) |
LGIC_TM_cation | 259..>346 | CDD:349853 | 19/87 (22%) | ||
TM1 helix | 263..284 | CDD:349853 | 5/20 (25%) | ||
TM2 helix | 292..313 | CDD:349853 | 2/20 (10%) | ||
TM3 helix | 323..346 | CDD:349853 | 5/22 (23%) |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 1 | 0.900 | - | - | E1_KOG3645 | |
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
Isobase | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 0 | 0.000 | Not matched by this tool. | |||
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 1 | 0.910 | - | - | ||
RoundUp | 0 | 0.000 | Not matched by this tool. | |||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
2 | 1.810 |