DRSC/TRiP Functional Genomics Resources

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Protein Alignment nAChRbeta1 and lgc-19

DIOPT Version :9

Sequence 1:NP_523927.2 Gene:nAChRbeta1 / 38545 FlyBaseID:FBgn0000038 Length:521 Species:Drosophila melanogaster
Sequence 2:NP_502905.2 Gene:lgc-19 / 190895 WormBaseID:WBGene00013655 Length:400 Species:Caenorhabditis elegans


Alignment Length:365 Identity:83/365 - (22%)
Similarity:166/365 - (45%) Gaps:61/365 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly    28 EERLVRDLFRGYNKLIRPVQNMTQKVGVRFG--------------LAFVQLINVNEKNQIMKSNV 78
            :..|.:.:||.|:..:.||..... |.:..|              |.:::|:.|.|..:  |.:|
 Worm    34 QRNLTKHIFRDYDPTVSPVYTWVD-VDLPIGYDNEAPKRYNYTIFLYYLKLVEVQEPQE--KISV 95

  Fly    79 WLRLV--WYDYQLQWDEADYGGIGVLRLPPDKVWKPDIVLFNNADGNYEVRYKSN----VLIYPT 137
            .:.::  |||.:|.|:.:.:....::.:..||||.|.|.:|...|   .|.::.|    :.|..|
 Worm    96 VMEIMEYWYDARLSWNASAWQNTTMIYMKQDKVWSPTISVFGVND---IVDFRDNDNRLICIENT 157

  Fly   138 GEVLWVPPAI-YQSSCTIDVTYFPFDQQTCIMKFGSWTFNGDQVSLALYNNKNFVDLSD--YWK- 198
            | .:|...:: ..::|.:||:.||||.|.|.::|....|...||.:.   |:.:.::.|  .:| 
 Worm   158 G-FIWDYVSVRVSANCEMDVSRFPFDTQICQIRFCLPIFYRVQVDIL---NEIYEEIMDERIFKT 218

  Fly   199 --SGTWDIIEVPAYLNVYEGDSNHPTETDITFYIIIRRKTLFYTVNLILPTVLISFLCVL-VFYL 260
              :..|.::.:...:.....:.|..|.....|.|.|||..|:|...::.|:.:|:|:.:: ||..
 Worm   219 MGNSEWKLLNLTNRVEALVYNDNMGTMDLAIFEITIRRNPLYYIYMIVFPSFIINFVSIVGVFLN 283

  Fly   261 PAEAGEKVTLGISILLSLVVFLLLVSKILPPTSLVLPLIAKYLLFTFIMNTVSI-LVTVIIINWN 324
            .|:...::.:|::.::::...|.:::..:|.|..: ||:..|::...::..::| :||.|.....
 Worm   284 GADKMSRLNVGLTNIMTMTFILGVMADKIPRTGNI-PLLGIYIIINLVIMLIAIAIVTAITELRK 347

  Fly   325 FRGPRTHRMPMYIRSIFLHYLPAFLFMKRPRKTRLRWMME 364
            :..|:.                      |.:||.||..:|
 Worm   348 WASPKL----------------------RKKKTALRAQLE 365

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nAChRbeta1NP_523927.2 LIC 8..500 CDD:273305 83/365 (23%)
Neur_chan_LBD 28..236 CDD:280998 57/233 (24%)
Neur_chan_memb 243..498 CDD:280999 24/124 (19%)
lgc-19NP_502905.2 LGIC_ECD_cation 75..257 CDD:349790 48/190 (25%)
LGIC_TM_cation 259..>346 CDD:349853 19/87 (22%)
TM1 helix 263..284 CDD:349853 5/20 (25%)
TM2 helix 292..313 CDD:349853 2/20 (10%)
TM3 helix 323..346 CDD:349853 5/22 (23%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3645
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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