DRSC/TRiP Functional Genomics Resources

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Protein Alignment nAChRbeta1 and lgc-18

DIOPT Version :10

Sequence 1:NP_523927.2 Gene:nAChRbeta1 / 38545 FlyBaseID:FBgn0000038 Length:521 Species:Drosophila melanogaster
Sequence 2:NP_510029.3 Gene:lgc-18 / 187977 WormBaseID:WBGene00011360 Length:399 Species:Caenorhabditis elegans


Alignment Length:325 Identity:82/325 - (25%)
Similarity:160/325 - (49%) Gaps:44/325 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly    26 EDEERLVRDLFRGYNKLIRPVQ---NMTQKVGV------RF----GLAFVQLINVNEKNQIMKSN 77
            |::.:|::|:|..|:..:.||.   :.||.:|.      ||    .|.:::|:.|.|..:  |.:
 Worm    32 ENQVKLIKDVFTNYDNTLSPVYTKIDPTQPIGYNPLAPKRFNYTVSLYYLKLVEVIEPEE--KVS 94

  Fly    78 VWLRLV--WYDYQLQWDEADYGGIGVLRLPPDKVWKPDIVLF------NNADGNYEVRYKSNVLI 134
            |.|.:.  |||.::.||.:.||.|.:|.:..||||.|.:.||      :..|.::.:     |.:
 Worm    95 VVLEMAEYWYDPRIAWDSSLYGDIKMLHMRQDKVWSPTLSLFRINDIADFRDPDFRM-----VCV 154

  Fly   135 YPTGEVLWVPPAIYQSSCTIDVTYFPFDQQTCIMKFGSWTFNGDQVSLALYNNKNFVDLSDYWKS 199
            ..||............:|.:||:.||:|.|||.::|....|...||.:.....:..::.:.:.|.
 Worm   155 ENTGHTYTTLSVKISLNCPLDVSMFPYDSQTCRIQFNMPLFFMQQVEMFSQIYEGILNSTVWEKM 219

  Fly   200 GT--WDI------IEVPAYLNVYEGDSNHPTETDITFYIIIRRKTLFYTVNLILPTVLISFLCVL 256
            |.  |::      :|:.:|     ||.....:. .||.|.|||..::|...:|.|:.:|:.|.::
 Worm   220 GNSEWELANLTHSVELLSY-----GDGLGDMQL-ATFEIRIRRNPMYYIYMIIFPSFIINALSII 278

  Fly   257 -VFYLPAEAGEKVTLGISILLSLVVFLLLVSKILPPTSLVLPLIAKYLLFTFIMNTVSILVTVII 320
             ||....:...|:.:|::.::::...|.:::..:|.|..: ||:..|::....:..|::.:|:::
 Worm   279 GVFLKKTDKMSKLNVGLTNIMTMTFILGVMADKIPKTGSI-PLLGIYIIVNLFIMIVAVGLTIVL 342

  Fly   321  320
             Worm   343  342

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nAChRbeta1NP_523927.2 LIC 8..500 CDD:455710 82/325 (25%)
LGIC_ECD_nAChR_proto_beta-like 27..236 CDD:349833 64/237 (27%)
Cys-loop 152..166 CDD:349833 7/13 (54%)
lgc-18NP_510029.3 LGIC_ECD_cation 75..257 CDD:349790 52/194 (27%)
Cys-loop 172..186 CDD:349790 7/13 (54%)
LGIC_TM_cation 259..>341 CDD:349853 17/82 (21%)
TM1 helix 259..284 CDD:349853 7/24 (29%)
TM2 helix 292..313 CDD:349853 2/20 (10%)
TM3 helix 323..341 CDD:349853 3/17 (18%)

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