DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment nAChRbeta1 and lgc-17

DIOPT Version :10

Sequence 1:NP_523927.2 Gene:nAChRbeta1 / 38545 FlyBaseID:FBgn0000038 Length:521 Species:Drosophila melanogaster
Sequence 2:NP_510028.2 Gene:lgc-17 / 187976 WormBaseID:WBGene00011359 Length:401 Species:Caenorhabditis elegans


Alignment Length:362 Identity:88/362 - (24%)
Similarity:160/362 - (44%) Gaps:45/362 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly    10 LCSIL------VLVAFSLVSASEDEERLVRDLFRGYNKLI----------RPVQNMTQKVGVRFG 58
            :|.|.      ||.....:.....::.|.||||..|:..|          .|..|.|:.|. |:.
 Worm    12 ICEIATFYYNPVLYVPDWIDYLNHQDNLTRDLFANYDPTISSVYSSSFDYEPSHNHTRTVD-RWN 75

  Fly    59 ----LAFVQLINVNEKNQIMKSNVWLRLV--WYDYQLQWDEADYGGIGVLRLPPDKVWKPDIVLF 117
                |.:::|:.|.|..:  |.:|.|.||  |||.:|.|:.:.|..|..:.:..:|||.|.:..|
 Worm    76 YTILLYYLKLVEVQEPEE--KVSVVLELVEQWYDPRLSWNSSLYSNIPTVFVRQEKVWSPTLSAF 138

  Fly   118 ------NNADGNYEVRYKSNVLIYPTGEVLWVPPAIYQSSCTIDVTYFPFDQQTCIMKFGSWTFN 176
                  :..|.::.:     |.|...|.:.........|:|.:||:.||||.|||.:.|....||
 Worm   139 GVNEIIDFRDQDFRI-----VSIDDIGYIQDYLSVRVSSNCPMDVSRFPFDSQTCQICFCLPIFN 198

  Fly   177 GDQVSL--ALYNNKNFVDLSDYWKSGTWDIIEVPAYLNVYEGDSNHPTETDITFYIIIRRKTLFY 239
            ..||.:  .:|.......:.....:..|.::.:...:...:.|.::.......|.|.|||..|:|
 Worm   199 IRQVKILNEIYEGILQEKIIKTMGNSEWKVVSLTNRVEQLKYDDDYGNMDLAVFEITIRRNPLYY 263

  Fly   240 TVNLILPTVLISFLCVL-VFYLPAEAGEKVTLGISILLSLVVFLLLVSKILPPTSLVLPLIAKYL 303
            ...::.|:.:|:.:.:: :|...|:...|:.:|::.::::...|.:::..:|.|..: ||:..|:
 Worm   264 IYMIVFPSFVINGISIVGIFLKSADKMSKLNVGLTNIMTMTFILGVMADKIPRTGSI-PLLGIYI 327

  Fly   304 LFTFIMNTVSILVTVIII---NWNFRGPRTHRMPMYI 337
            :...::..::|.|.|:|.   .|..  ||......||
 Worm   328 IINLLIMIIAITVVVLITELRQWAV--PRLKLKKSYI 362

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nAChRbeta1NP_523927.2 LIC 8..500 CDD:455710 88/362 (24%)
LGIC_ECD_nAChR_proto_beta-like 27..236 CDD:349833 61/232 (26%)
Cys-loop 152..166 CDD:349833 8/13 (62%)
lgc-17NP_510028.2 LGIC_ECD_cation 77..259 CDD:349790 48/188 (26%)
Cys-loop 174..188 CDD:349790 8/13 (62%)
LGIC_TM 261..>317 CDD:476813 10/55 (18%)
TM1 helix 265..286 CDD:349850 3/20 (15%)
TM2 helix 294..315 CDD:349850 2/20 (10%)

Return to query results.
Submit another query.