DRSC/TRiP Functional Genomics Resources

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Protein Alignment nAChRbeta1 and lgc-16

DIOPT Version :10

Sequence 1:NP_523927.2 Gene:nAChRbeta1 / 38545 FlyBaseID:FBgn0000038 Length:521 Species:Drosophila melanogaster
Sequence 2:NP_510027.2 Gene:lgc-16 / 187975 WormBaseID:WBGene00011358 Length:401 Species:Caenorhabditis elegans


Alignment Length:362 Identity:81/362 - (22%)
Similarity:151/362 - (41%) Gaps:77/362 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly    13 ILVLVAFSLVSASED---------------EERLVRDLFRGYNKLIRPV-------------QNM 49
            |:.|.:||.:||...               :|.|..|||..|:..|..|             ...
 Worm     6 IVTLFSFSDISAFYHDPGLYAPGWIDYLNLQENLTNDLFANYDPTISTVYADIADWEPLGDNPRT 70

  Fly    50 TQKVGVRFGLAFVQLINVNEKNQIMKSNVWLRLV--WYDYQLQWDEADYGGIGVLRLPPDKVWKP 112
            ..:......|.:::|:.|.|..:  |.:|.|.||  |||.:|.|:.:.|..:..:....:|||.|
 Worm    71 IDRWNYTILLYYLKLVEVQEPAE--KVSVVLELVERWYDPRLSWNISLYSNVSTIFARQEKVWSP 133

  Fly   113 --------DIVLFNNAD------------GNY-EVRYKSNVLIYPTGEVLWVPPAIYQSSCTIDV 156
                    :|:.|.:.|            .:| .||..:|                    |.:||
 Worm   134 TLSPFGVNEIIDFRDQDFRLISIDFTGYLNDYLSVRVSAN--------------------CPMDV 178

  Fly   157 TYFPFDQQTCIMKFGSWTFNGDQVSL--ALYNNKNFVDLSDYWKSGTWDIIEVPAYLNVYEGDSN 219
            :.||||.|||.::|....||..||.:  .:|.......:.....:..|.::.:...:...:.|.:
 Worm   179 SRFPFDSQTCQIRFCLPIFNIRQVKILNEIYEGILQEKIIKTMGNSEWKVVSLTNRVEQLKYDDD 243

  Fly   220 HPTETDITFYIIIRRKTLFYTVNLILPTVLISFLCVL-VFYLPAEAGEKVTLGISILLSLVVFLL 283
            :.......|.|.|||..|:|...::.|:.:|:.:.:: :|...|:...|:.:|::.::::...|.
 Worm   244 YGNMDLAVFEITIRRNPLYYIYMIVFPSFVINGISIVGIFLKSADKMSKLNVGLTNIMTMTFILG 308

  Fly   284 LVSKILPPTSLVLPLIAKYLLFTFIMNTVSILVTVII 320
            :::..:|.|..: ||:..|::...::..::|.|.|:|
 Worm   309 VMADKIPRTGSI-PLLGIYIIINLLIMIIAITVVVLI 344

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nAChRbeta1NP_523927.2 LIC 8..500 CDD:455710 81/362 (22%)
LGIC_ECD_nAChR_proto_beta-like 27..236 CDD:349833 57/261 (22%)
Cys-loop 152..166 CDD:349833 8/13 (62%)
lgc-16NP_510027.2 LGIC_ECD_cation 77..259 CDD:349790 48/203 (24%)
Cys-loop 174..188 CDD:349790 8/13 (62%)
LGIC_TM 261..>317 CDD:476813 10/55 (18%)
TM1 helix 265..284 CDD:349850 2/18 (11%)
TM2 helix 291..315 CDD:349850 3/23 (13%)

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