Sequence 1: | NP_523927.2 | Gene: | nAChRbeta1 / 38545 | FlyBaseID: | FBgn0000038 | Length: | 521 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_510025.2 | Gene: | lgc-15 / 187973 | WormBaseID: | WBGene00011356 | Length: | 399 | Species: | Caenorhabditis elegans |
Alignment Length: | 323 | Identity: | 80/323 - (24%) |
---|---|---|---|
Similarity: | 149/323 - (46%) | Gaps: | 41/323 - (12%) |
- Green bases have known domain annotations that are detailed below.
Fly 26 EDEERLVRDLFRGYNKLIRPVQ---NMTQKVG-------------VRFGLAFVQLINVNEKNQIM 74
Fly 75 KSNVWLRLVWYDYQLQWDEADYGGIGVLRLPPDKVWKPDIVLFNNA------DGNYEVRYKSNVL 133
Fly 134 IYPTGEVLWVPPAIYQSSCTIDVTYFPFDQQTCIMKFGSWTFNGDQVSL--ALYNNKNFVDLSDY 196
Fly 197 WK---SGTWDIIEVPAYLNVYEGDSNHPTETDITFYIIIRRKTLFYTVNLILPTVLISFLCVL-V 257
Fly 258 FYLPAEAGEKVTLGISILLSLVVFLLLVSKILPPTSLVLPLIAKYLLFTFIMNTVSI-LVTVI 319 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
nAChRbeta1 | NP_523927.2 | LIC | 8..500 | CDD:273305 | 80/323 (25%) |
Neur_chan_LBD | 28..236 | CDD:280998 | 58/234 (25%) | ||
Neur_chan_memb | 243..498 | CDD:280999 | 19/79 (24%) | ||
lgc-15 | NP_510025.2 | LGIC_ECD_cation | 74..258 | CDD:349790 | 46/194 (24%) |
LGIC_TM_cation | 260..>343 | CDD:349853 | 19/83 (23%) | ||
TM1 helix | 264..285 | CDD:349853 | 5/20 (25%) | ||
TM2 helix | 293..314 | CDD:349853 | 2/20 (10%) | ||
TM3 helix | 324..343 | CDD:349853 | 4/18 (22%) |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 1 | 0.900 | - | - | E1_KOG3645 | |
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
Isobase | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 0 | 0.000 | Not matched by this tool. | |||
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 1 | 0.910 | - | - | ||
RoundUp | 0 | 0.000 | Not matched by this tool. | |||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
2 | 1.810 |