DRSC/TRiP Functional Genomics Resources

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Protein Alignment nAChRbeta1 and lgc-14

DIOPT Version :9

Sequence 1:NP_523927.2 Gene:nAChRbeta1 / 38545 FlyBaseID:FBgn0000038 Length:521 Species:Drosophila melanogaster
Sequence 2:NP_510024.2 Gene:lgc-14 / 187972 WormBaseID:WBGene00011355 Length:400 Species:Caenorhabditis elegans


Alignment Length:332 Identity:85/332 - (25%)
Similarity:154/332 - (46%) Gaps:49/332 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly    26 EDEERLVRDLFRGYNKLIRPVQNM---TQKVGV------RFG----LAFVQLINVNEKNQIMKSN 77
            |.:..|.||||.||:..:.||.:.   .|.:|.      |:.    |..::|:.|||..:.:...
 Worm    32 ESQTNLTRDLFNGYDPTVSPVYSKIDPLQPLGYDPDAPKRYNYSIMLYSLKLVEVNEPAEKVAVV 96

  Fly    78 VWLRLVWYDYQLQWDEADYGGIGVLRLPPDKVWKPDIVLFNNADGNYEVR--------YKSNVLI 134
            :.:...|||.:|.|:.:.|..|.........||.|.:..| .||...::|        ..||..|
 Worm    97 MEIMEYWYDIRLSWNASLYDDIDTFYTRQSNVWSPTLSAF-GADELVDLRDPDFRMVCVNSNGYI 160

  Fly   135 YPTGEVLWVPPAIYQSSCTIDVTYFPFDQQTCIMKFGSWTFNGDQVSLALYNNKNFVD--LSDYW 197
            |....|.      ..|||.::|..||||.|||.:||....||..::.:.   |:.:|.  :||.|
 Worm   161 YDYISVR------VSSSCPMNVYKFPFDYQTCQIKFCLPIFNSVEIQIF---NEIYVGVLMSDLW 216

  Fly   198 K---SGTWDIIEVP---AYLNVYEGDSNHPTETDI-TFYIIIRRKTLFYTVNLILPTVLISFLCV 255
            :   :..|.:..:.   ..|...:|..|    .|: .|.|.|:|..|:|...:|.|:.:|:.:.:
 Worm   217 ETMGNSEWKLTNLSNRVETLQYNDGFGN----LDLGIFEITIKRNPLYYIYMIIFPSFIINVVSI 277

  Fly   256 L-VFYLPAEAGEKVTLGISILLSLVVFLLLVSKILPPTSLVLPLIAKYLLFTFIMNTVSI-LVTV 318
            : ||...|:...::.:|::.::::...|.:::..:|.|. .:|::..|::....:..::| :||:
 Worm   278 IGVFLKGADKMSRLNVGLTNIMTMTFILGVMADKIPRTG-TIPMLGVYIIVNLAIMIIAIGIVTM 341

  Fly   319 I--IINW 323
            |  :.:|
 Worm   342 ITELRHW 348

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nAChRbeta1NP_523927.2 LIC 8..500 CDD:273305 85/332 (26%)
Neur_chan_LBD 28..236 CDD:280998 65/237 (27%)
Neur_chan_memb 243..498 CDD:280999 17/85 (20%)
lgc-14NP_510024.2 LGIC_ECD_cation 75..257 CDD:349790 52/195 (27%)
LGIC_TM 259..349 CDD:365787 19/91 (21%)
TM1 helix 259..284 CDD:349850 7/24 (29%)
TM2 helix 292..313 CDD:349850 2/20 (10%)
TM3 helix 323..345 CDD:349850 5/21 (24%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3645
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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