Sequence 1: | NP_523927.2 | Gene: | nAChRbeta1 / 38545 | FlyBaseID: | FBgn0000038 | Length: | 521 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_510024.2 | Gene: | lgc-14 / 187972 | WormBaseID: | WBGene00011355 | Length: | 400 | Species: | Caenorhabditis elegans |
Alignment Length: | 332 | Identity: | 85/332 - (25%) |
---|---|---|---|
Similarity: | 154/332 - (46%) | Gaps: | 49/332 - (14%) |
- Green bases have known domain annotations that are detailed below.
Fly 26 EDEERLVRDLFRGYNKLIRPVQNM---TQKVGV------RFG----LAFVQLINVNEKNQIMKSN 77
Fly 78 VWLRLVWYDYQLQWDEADYGGIGVLRLPPDKVWKPDIVLFNNADGNYEVR--------YKSNVLI 134
Fly 135 YPTGEVLWVPPAIYQSSCTIDVTYFPFDQQTCIMKFGSWTFNGDQVSLALYNNKNFVD--LSDYW 197
Fly 198 K---SGTWDIIEVP---AYLNVYEGDSNHPTETDI-TFYIIIRRKTLFYTVNLILPTVLISFLCV 255
Fly 256 L-VFYLPAEAGEKVTLGISILLSLVVFLLLVSKILPPTSLVLPLIAKYLLFTFIMNTVSI-LVTV 318
Fly 319 I--IINW 323 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
nAChRbeta1 | NP_523927.2 | LIC | 8..500 | CDD:273305 | 85/332 (26%) |
Neur_chan_LBD | 28..236 | CDD:280998 | 65/237 (27%) | ||
Neur_chan_memb | 243..498 | CDD:280999 | 17/85 (20%) | ||
lgc-14 | NP_510024.2 | LGIC_ECD_cation | 75..257 | CDD:349790 | 52/195 (27%) |
LGIC_TM | 259..349 | CDD:365787 | 19/91 (21%) | ||
TM1 helix | 259..284 | CDD:349850 | 7/24 (29%) | ||
TM2 helix | 292..313 | CDD:349850 | 2/20 (10%) | ||
TM3 helix | 323..345 | CDD:349850 | 5/21 (24%) |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 1 | 0.900 | - | - | E1_KOG3645 | |
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
Isobase | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 0 | 0.000 | Not matched by this tool. | |||
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 1 | 0.910 | - | - | ||
RoundUp | 0 | 0.000 | Not matched by this tool. | |||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
2 | 1.810 |