DRSC/TRiP Functional Genomics Resources

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Protein Alignment nAChRbeta1 and lgc-6

DIOPT Version :9

Sequence 1:NP_523927.2 Gene:nAChRbeta1 / 38545 FlyBaseID:FBgn0000038 Length:521 Species:Drosophila melanogaster
Sequence 2:NP_501410.3 Gene:lgc-6 / 184621 WormBaseID:WBGene00017544 Length:425 Species:Caenorhabditis elegans


Alignment Length:378 Identity:85/378 - (22%)
Similarity:167/378 - (44%) Gaps:71/378 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 WLLCSILVLVAFSLVSASEDEERLVRDLF-RGYNKLIRPVQNMTQKVGVRFGLAFVQLINVNEKN 71
            |:| ..|..|||...|   :.|.|::.|| :.|:..::|..::|.   |........|:::::..
 Worm     3 WIL-RFLTAVAFLETS---NTETLLQQLFNQTYDVDMKPSDDLTM---VTITPNTFILLSMDQTQ 60

  Fly    72 QIMKSNVWLRLVWYDYQLQWD------EADYGGIGVLRLPPDKVWKPDIVLFNNADGN------- 123
            :.::.:....|.|||..|.|:      |.|:     :::...:.|.||::..|..|.:       
 Worm    61 ETIQYSEEFLLRWYDPILHWNQSAVSYENDW-----IKISASRAWIPDVIFTNGIDMDPLLDKDM 120

  Fly   124 --YEVRYKSNVLIYPTGEVLWVPPAIYQSSCTIDVTYFPFDQQTCIMKFGSWTFNGDQVSLALYN 186
              .::||        .||:....||:..|.|.:::..||:|.|.|.:..|||.|:...:|:....
 Worm   121 QMADLRY--------NGEIRTSRPAVVSSPCPLEIDNFPYDVQKCNISMGSWAFDRRFLSVQSST 177

  Fly   187 NKNFVDLSDYWKSGTWDIIEVPAYLNVYEGDSNHPTE---TDITFYIIIRRKTLFYTVNLILPTV 248
            .:.......:..:..|::|.:   |.|.....:...|   ::||:.:.::||.::|.:.:..||.
 Worm   178 IEILPQKGRFEGNSEWELISI---LTVRSDSYDTLLEEWFSEITYVVTLKRKPVYYVLVIQAPTF 239

  Fly   249 LISFLCVLVFYLP----AEAGEKVTLGISILLSLVVFLLLVSKILPPTSLVLPLIAKYLLFTFIM 309
            ::..:.:...:.|    .|...||.|.:::..::.:.|.|||.::|..|. |||:..|::....:
 Worm   240 ILCTITIFGLFTPNSNEDERLSKVELCLNMFAAISMMLQLVSDMMPKASR-LPLLGNYIIAEIFV 303

  Fly   310 NTVSILVTVIIINWNFRGPRTHRMPMYIRSIFLHYLPAFLFMKRPRKTRLRWM 362
            .|.:.:.::||       .:||           |::.....  |||    ||:
 Worm   304 VTAATIASIII-------QQTH-----------HHVHTSAI--RPR----RWL 332

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nAChRbeta1NP_523927.2 LIC 8..500 CDD:273305 85/378 (22%)
Neur_chan_LBD 28..236 CDD:280998 48/226 (21%)
Neur_chan_memb 243..498 CDD:280999 28/124 (23%)
lgc-6NP_501410.3 LIC 1..424 CDD:273305 85/378 (22%)
LGIC_ECD_cation 42..226 CDD:349790 41/202 (20%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3645
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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