Sequence 1: | NP_523927.2 | Gene: | nAChRbeta1 / 38545 | FlyBaseID: | FBgn0000038 | Length: | 521 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_501410.3 | Gene: | lgc-6 / 184621 | WormBaseID: | WBGene00017544 | Length: | 425 | Species: | Caenorhabditis elegans |
Alignment Length: | 378 | Identity: | 85/378 - (22%) |
---|---|---|---|
Similarity: | 167/378 - (44%) | Gaps: | 71/378 - (18%) |
- Green bases have known domain annotations that are detailed below.
Fly 8 WLLCSILVLVAFSLVSASEDEERLVRDLF-RGYNKLIRPVQNMTQKVGVRFGLAFVQLINVNEKN 71
Fly 72 QIMKSNVWLRLVWYDYQLQWD------EADYGGIGVLRLPPDKVWKPDIVLFNNADGN------- 123
Fly 124 --YEVRYKSNVLIYPTGEVLWVPPAIYQSSCTIDVTYFPFDQQTCIMKFGSWTFNGDQVSLALYN 186
Fly 187 NKNFVDLSDYWKSGTWDIIEVPAYLNVYEGDSNHPTE---TDITFYIIIRRKTLFYTVNLILPTV 248
Fly 249 LISFLCVLVFYLP----AEAGEKVTLGISILLSLVVFLLLVSKILPPTSLVLPLIAKYLLFTFIM 309
Fly 310 NTVSILVTVIIINWNFRGPRTHRMPMYIRSIFLHYLPAFLFMKRPRKTRLRWM 362 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
nAChRbeta1 | NP_523927.2 | LIC | 8..500 | CDD:273305 | 85/378 (22%) |
Neur_chan_LBD | 28..236 | CDD:280998 | 48/226 (21%) | ||
Neur_chan_memb | 243..498 | CDD:280999 | 28/124 (23%) | ||
lgc-6 | NP_501410.3 | LIC | 1..424 | CDD:273305 | 85/378 (22%) |
LGIC_ECD_cation | 42..226 | CDD:349790 | 41/202 (20%) |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 1 | 0.900 | - | - | E1_KOG3645 | |
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
Isobase | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 0 | 0.000 | Not matched by this tool. | |||
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 1 | 0.910 | - | - | ||
RoundUp | 0 | 0.000 | Not matched by this tool. | |||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
2 | 1.810 |