DRSC/TRiP Functional Genomics Resources

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Protein Alignment nAChRbeta1 and lgc-22

DIOPT Version :9

Sequence 1:NP_523927.2 Gene:nAChRbeta1 / 38545 FlyBaseID:FBgn0000038 Length:521 Species:Drosophila melanogaster
Sequence 2:NP_001255259.1 Gene:lgc-22 / 184533 WormBaseID:WBGene00017483 Length:445 Species:Caenorhabditis elegans


Alignment Length:320 Identity:74/320 - (23%)
Similarity:131/320 - (40%) Gaps:67/320 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly    47 QNMTQ---KVGVRFGLAFVQLINVNEKNQIMKSNVWLRLV--WYDYQLQWDEADYGGIGVLRLPP 106
            ||.|.   || ||.....:..:.::|:.|.:|  |:.|.|  |.|..:.||:..: |:..|....
 Worm    76 QNATDNKTKV-VRVESVRINNVEIDERRQNVK--VFGRFVLSWNDTMVSWDKEQW-GLSWLNFYW 136

  Fly   107 DKVWKPDIVLFNNADGNYEVRYKSNVLI--YPTGEV-LW-----VPPAIYQSSCTIDVTY--FPF 161
            .::|.|:||..|....:...:..|.||.  | ||:: ||     ..|..:|        |  :|.
 Worm   137 IQIWTPNIVQINGGSTSNPGQVTSKVLAANY-TGQIYLWSDFSFTTPFRFQ--------YEDYPN 192

  Fly   162 DQQTCIMKFGSWTFNGDQVSLALY-------NNKNFVDLSDYWKSGTWDIIEVPAYLNVYE---- 215
            |.|....||      .|:..:|::       .||.....:|.:.|| |.|.:|......:.    
 Worm   193 DMQRVCYKF------DDKRLMAVHFTVAEGVKNKEREATTDPFVSG-WKIEDVEVVSITHSPDNG 250

  Fly   216 GDSNHPTETDIT--------------------FYIIIRRKTLFYTVNLILPTVLISFLCVLVFYL 260
            |...:..|:..|                    ..|.:||..:::|..::||.::.|...:...:.
 Worm   251 GTGKNGLESPYTVEQLSDPRRNPFDVQADNGELCISLRRNAVYFTAEMLLPALITSLFTLAAVFF 315

  Fly   261 PAEAGEKVTLGISILLSLVVFLLLVSKILPPTSLVLPLIAKYLLFTFIMNTVSILVTVII 320
            .....:.:.||.|: ::.::.|:|||:.||..:...|.|.||..|......:..::::::
 Worm   316 QLSKTQPILLGFSV-VAQILSLILVSQRLPSFTAHTPTILKYAGFNMTWTAILFVISLVL 374

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nAChRbeta1NP_523927.2 LIC 8..500 CDD:273305 74/320 (23%)
Neur_chan_LBD 28..236 CDD:280998 56/234 (24%)
Neur_chan_memb 243..498 CDD:280999 17/78 (22%)
lgc-22NP_001255259.1 ShKT 24..58 CDD:214586
LGIC_ECD 85..249 CDD:355788 46/183 (25%)
Cys-loop 183..198 CDD:349787 5/22 (23%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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