Sequence 1: | NP_523927.2 | Gene: | nAChRbeta1 / 38545 | FlyBaseID: | FBgn0000038 | Length: | 521 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_001255259.1 | Gene: | lgc-22 / 184533 | WormBaseID: | WBGene00017483 | Length: | 445 | Species: | Caenorhabditis elegans |
Alignment Length: | 320 | Identity: | 74/320 - (23%) |
---|---|---|---|
Similarity: | 131/320 - (40%) | Gaps: | 67/320 - (20%) |
- Green bases have known domain annotations that are detailed below.
Fly 47 QNMTQ---KVGVRFGLAFVQLINVNEKNQIMKSNVWLRLV--WYDYQLQWDEADYGGIGVLRLPP 106
Fly 107 DKVWKPDIVLFNNADGNYEVRYKSNVLI--YPTGEV-LW-----VPPAIYQSSCTIDVTY--FPF 161
Fly 162 DQQTCIMKFGSWTFNGDQVSLALY-------NNKNFVDLSDYWKSGTWDIIEVPAYLNVYE---- 215
Fly 216 GDSNHPTETDIT--------------------FYIIIRRKTLFYTVNLILPTVLISFLCVLVFYL 260
Fly 261 PAEAGEKVTLGISILLSLVVFLLLVSKILPPTSLVLPLIAKYLLFTFIMNTVSILVTVII 320 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
nAChRbeta1 | NP_523927.2 | LIC | 8..500 | CDD:273305 | 74/320 (23%) |
Neur_chan_LBD | 28..236 | CDD:280998 | 56/234 (24%) | ||
Neur_chan_memb | 243..498 | CDD:280999 | 17/78 (22%) | ||
lgc-22 | NP_001255259.1 | ShKT | 24..58 | CDD:214586 | |
LGIC_ECD | 85..249 | CDD:355788 | 46/183 (25%) | ||
Cys-loop | 183..198 | CDD:349787 | 5/22 (23%) | ||
Blue background indicates that the domain is not in the aligned region. |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 0 | 0.000 | Not matched by this tool. | |||
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
Isobase | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 0 | 0.000 | Not matched by this tool. | |||
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 1 | 0.910 | - | - | ||
RoundUp | 0 | 0.000 | Not matched by this tool. | |||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
1 | 0.910 |