Sequence 1: | NP_523927.2 | Gene: | nAChRbeta1 / 38545 | FlyBaseID: | FBgn0000038 | Length: | 521 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_510359.3 | Gene: | lgc-25 / 181525 | WormBaseID: | WBGene00010994 | Length: | 502 | Species: | Caenorhabditis elegans |
Alignment Length: | 541 | Identity: | 116/541 - (21%) |
---|---|---|---|
Similarity: | 228/541 - (42%) | Gaps: | 98/541 - (18%) |
- Green bases have known domain annotations that are detailed below.
Fly 9 LLCSILVLVAF-SLVSASEDEERLVRDLFRGYNKLIRPVQN---MTQKVGVRFGLAFVQLINVNE 69
Fly 70 KNQIMKSNVWLRLVWYDYQLQWDEADYGGIGVLRLPPDKVWKPDIVLFNNADGNYEVRYKSNV-- 132
Fly 133 LIYPTGEVLWVPPAIYQSSCTIDVTYFPFDQQTCIMKFGSWTFNGDQVSLA-LYNNKNF------ 190
Fly 191 -----VDLSDYWKSGTWDIIEV--------PAYLNVYEGDSNHPTETDITFY-------IIIRRK 235
Fly 236 TLFYTVNLILPTVLISFLCVLVFYLPAEAGEKVTLGISILLSLVVFLLLVSKILPPTSLVLPLIA 300
Fly 301 KYLLFTFIMNTVSILVTVIIINWNFRGPRTHRMPMYIRSIFLHYLPAFLFMKRPRKTRLRWMMEM 365
Fly 366 PGMSMPAHPHPSYGSPAELPKHISAIGGKQSKMEVMELSDLHHPNCKINRKVNSGG----ELGLG 426
Fly 427 DGCRRE----SESSDSILL-------SPEASKATEAVEFIAEHLRNEDLYI-QTREDWKYVAMVI 479
Fly 480 DRLQLYIFFIVTTAGTVGILM 500 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
nAChRbeta1 | NP_523927.2 | LIC | 8..500 | CDD:273305 | 115/539 (21%) |
Neur_chan_LBD | 28..236 | CDD:280998 | 62/239 (26%) | ||
Neur_chan_memb | 243..498 | CDD:280999 | 47/270 (17%) | ||
lgc-25 | NP_510359.3 | LGIC_ECD_cation | 52..256 | CDD:349790 | 53/213 (25%) |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 1 | 0.900 | - | - | E1_KOG3645 | |
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
Isobase | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 0 | 0.000 | Not matched by this tool. | |||
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 1 | 0.910 | - | - | ||
RoundUp | 0 | 0.000 | Not matched by this tool. | |||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 1 | 1.000 | - | - | ||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
3 | 2.810 |