DRSC/TRiP Functional Genomics Resources

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Protein Alignment nAChRbeta1 and acr-8

DIOPT Version :9

Sequence 1:NP_523927.2 Gene:nAChRbeta1 / 38545 FlyBaseID:FBgn0000038 Length:521 Species:Drosophila melanogaster
Sequence 2:NP_001361818.1 Gene:acr-8 / 181246 WormBaseID:WBGene00000047 Length:540 Species:Caenorhabditis elegans


Alignment Length:515 Identity:185/515 - (35%)
Similarity:285/515 - (55%) Gaps:71/515 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly    19 FSLVSASEDEERLVRDLFRGYNKLIRPVQNMTQKVGVRFGLAFVQLINVNEKNQIMKSNVWLRLV 83
            |..|:.:...:::..||...|||.:||::|.::.|.|:||.:.:::|:|:|.||::.:|:||.:.
 Worm    16 FFYVNPNRYADQMYEDLLYYYNKNVRPIKNASESVKVKFGSSLIRIIDVDEVNQVLTTNLWLEMQ 80

  Fly    84 WYDYQLQWDEADYGGIGVLRLPPDKVWKPDIVLFNNADGNYEVRYKSNVLIYPTGEVLWVPPAIY 148
            |:||:|.||...:|.|..|.:|.|::|.|||:|:|||||...:...|:.::|..|.|:|.||:||
 Worm    81 WFDYRLMWDPGRWGKIRKLHVPVDQIWIPDILLYNNADGEPHITIMSDAIVYYNGLVVWKPPSIY 145

  Fly   149 QSSCTIDVTYFPFDQQTCIMKFGSWTFNG---DQVSLALYN----NK-----------NFVDLSD 195
            :|.|:||:.|||:|.|||.||||.||:||   |...|....    ||           ..:|||.
 Worm   146 KSFCSIDIEYFPYDTQTCWMKFGGWTYNGFLLDVRQLPTTGCEVVNKADDEGEFQFLGRGMDLSG 210

  Fly   196 YWKSGTWDIIEVPA--YLNVYEGDSNHPTETDITFYIIIRRKTLFYTVNLILPTVLISFLCVLVF 258
            |:.|..||::|:.:  :..:|.|........||||.|.|||||||||:||::|..:.:.|..:||
 Worm   211 YYPSLEWDLMELNSARHEKIYAGCCGQDFYIDITFKIEIRRKTLFYTINLMIPCTMFAILTSIVF 275

  Fly   259 YLPAEAGEKVTLGISILLSLVVFLLLVSKILPPTSLVLPLIAKYLLFTFIMNTVSILVTVIIINW 323
            |:| ....|:|..||||::|.||.|::..::||||||:|||.||||||..:.::||:::||.:|:
 Worm   276 YVP-PIEHKMTFSISILVTLTVFYLILIDLVPPTSLVIPLIGKYLLFTMFLVSISIMLSVISLNF 339

  Fly   324 NFRGPRTHRMPMYIRSIFLHYLPAFLFMKRPRKTRLRWMMEMPGMSMPAHPHPSYGSPAELPKHI 388
            ..|...:..||.:::.:|:|.||.::.:|...:                      ...::....|
 Worm   340 YRRDGSSFPMPHWMKVVFIHTLPRYICIKTAEE----------------------DDGSDRGSSI 382

  Fly   389 SAIGGKQSKMEVMELSDLHHPN---CKINRKVNSGGELGLGDGCRRESESSDSILLSPEASKATE 450
            |.||         ...|...|:   ..:|.:..:|          |.||.....:.........:
 Worm   383 SDIG---------PFMDSRRPSPFFITVNERQLNG----------RLSELKKKGMHPDLIRNMIQ 428

  Fly   451 AVEFIAEH---LRNEDLYIQTREDWKYVAMVIDRLQLYIFFIVTTAGTVGILMDAPHIFE 507
            .||||||:   |:.||   :..|||.|||.||||:.|.||.|:...||..||:::|.:|:
 Worm   429 NVEFIAEYFNSLKKED---KVSEDWSYVANVIDRIFLIIFSIMNVVGTWVILLNSPALFD 485

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nAChRbeta1NP_523927.2 LIC 8..500 CDD:273305 182/506 (36%)
Neur_chan_LBD 28..236 CDD:280998 91/227 (40%)
Neur_chan_memb 243..498 CDD:280999 81/260 (31%)
acr-8NP_001361818.1 LGIC_ECD 24..255 CDD:355788 93/230 (40%)
Neur_chan_memb 260..476 CDD:367256 81/260 (31%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3645
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D188416at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
54.780

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