Sequence 1: | NP_523927.2 | Gene: | nAChRbeta1 / 38545 | FlyBaseID: | FBgn0000038 | Length: | 521 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_503167.1 | Gene: | lgc-26 / 178554 | WormBaseID: | WBGene00021981 | Length: | 486 | Species: | Caenorhabditis elegans |
Alignment Length: | 527 | Identity: | 127/527 - (24%) |
---|---|---|---|
Similarity: | 226/527 - (42%) | Gaps: | 87/527 - (16%) |
- Green bases have known domain annotations that are detailed below.
Fly 10 LCSILVLVAF---SLVSASEDEERLVRDLFRGYNKLIRP--VQNMTQKVGVRFGLAFVQLINVNE 69
Fly 70 KNQIMKSNVWLRLVWYDYQLQWDEADYGGIGVLRLPPDKVWKPDIVLFNNADGNYEVRYKSNV-- 132
Fly 133 LIYPTGEVLWVPPAIYQSSCTIDVTYFPFDQQTCIMKFGSWTFNGDQVSL------ALYNNKNF- 190
Fly 191 -----VDLSDYWKSGTWDIIEVPAYLNVYEG-----DSNHPTETD-----ITFYIIIRRKTLFYT 240
Fly 241 VNLILPTVLISFLCVLVFYLPAEAGEKVTLGISILLSLVVFLLLVSKILPPTSLVLPLIAKYLLF 305
Fly 306 TFIMNTVSILVT----VIIINWNFRGPRTHRMPMYIRSIFLHYLPAFLFMKRPRKTRLRWMMEMP 366
Fly 367 GMSM-------PAHPHPSYGSPAELPKHIS-AIGGKQSKMEVMELSDLHHPNCKINRKVNSGGEL 423
Fly 424 GLGDGCRRESESSDSILLSPEASKATEAVEFIAEHLRNEDLYIQTREDWKYVAMVIDRLQLYIFF 488
Fly 489 IVTTAGT 495 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
nAChRbeta1 | NP_523927.2 | LIC | 8..500 | CDD:273305 | 127/527 (24%) |
Neur_chan_LBD | 28..236 | CDD:280998 | 60/233 (26%) | ||
Neur_chan_memb | 243..498 | CDD:280999 | 58/265 (22%) | ||
lgc-26 | NP_503167.1 | LGIC_ECD_cation | 52..256 | CDD:349790 | 50/207 (24%) |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 1 | 0.900 | - | - | E1_KOG3645 | |
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
Isobase | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 0 | 0.000 | Not matched by this tool. | |||
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 1 | 0.910 | - | - | ||
RoundUp | 0 | 0.000 | Not matched by this tool. | |||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 1 | 1.000 | - | - | ||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
3 | 2.810 |