DRSC/TRiP Functional Genomics Resources

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Protein Alignment nAChRbeta1 and lgc-26

DIOPT Version :9

Sequence 1:NP_523927.2 Gene:nAChRbeta1 / 38545 FlyBaseID:FBgn0000038 Length:521 Species:Drosophila melanogaster
Sequence 2:NP_503167.1 Gene:lgc-26 / 178554 WormBaseID:WBGene00021981 Length:486 Species:Caenorhabditis elegans


Alignment Length:527 Identity:127/527 - (24%)
Similarity:226/527 - (42%) Gaps:87/527 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly    10 LCSILVLVAF---SLVSASEDEERLVRDLFRGYNKLIRP--VQNMTQKVGVRFGLAFVQLINVNE 69
            |.||.||:.|   :..|.|.||.:|...|.:|||..:||  |::...:|.|...:|.|:.::.:|
 Worm     6 LISIGVLINFHFGNAASQSTDERKLEAQLLKGYNSKVRPVKVESTVTQVAVYLNIAHVEKVDEHE 70

  Fly    70 KNQIMKSNVWLRLVWYDYQLQWDEADYGGIGVLRLPPDKVWKPDIVLFNNADGNYEVRYKSNV-- 132
            :..::..:  |...|.|..|:| |.....|..|.:...|:|:|.:.|:|:|.||....|.:.:  
 Worm    71 QTALVHGH--LMASWTDEYLKW-ERKATNISTLSIASSKLWQPALQLYNSARGNSWSLYLTGLPA 132

  Fly   133 LIYPTGEVLWVPPAIYQSSCTIDVTYFPFDQQTCIMKFGSWTFNGDQVSL------ALYNNKNF- 190
            ::|.||:|.......:..:|..|.|.:|:|||:|.:....|.:...||:|      |.|..... 
 Worm   133 IVYNTGKVWSRGTFSFFVTCQFDFTNWPYDQQSCPIVITDWVYGLGQVNLSDPATAAGYGKPTIR 197

  Fly   191 -----VDLSDYWKSGTWDIIEVPAYLNVYEG-----DSNHPTETD-----ITFYIIIRRKTLFYT 240
                 :|.::....|.|::|: ....:.|.|     |:......|     :.|.|.::|...:::
 Worm   198 LSYDPIDETNKRHVGGWEVID-SWKKHCYWGPKGCLDAEPDGNPDWYWSLLEFGITLKRHLPYFS 261

  Fly   241 VNLILPTVLISFLCVLVFYLPAEAGEKVTLGISILLSLVVFLLLVSKILPPTSLVLPLIAKYLLF 305
            :.:::|.|..|.:.:|.|::.........:.::|.|.......::|: :||.|...|.|..    
 Worm   262 LTIVMPMVSTSLMILLGFWIENFDFNVFLITLNIALQATYGSNILSR-MPPGSGRTPKIVH---- 321

  Fly   306 TFIMNTVSILVT----VIIINWNFRGPRTHRMPMYIRSIFLHYLPAFLFMKRPRKTRLRWMMEMP 366
               :.::.:|::    |:|:..||   ...|:|.:....|     .:...:.|:|..|.......
 Worm   322 ---LYSIGLLISAFQVVLIVMSNF---LRVRLPSHYEFDF-----GYDITEIPKKFGLTRFFTTK 375

  Fly   367 GMSM-------PAHPHPSYGSPAELPKHIS-AIGGKQSKMEVMELSDLHHPNCKINRKVNSGGEL 423
            |:|.       ||    ...|.||:.|..| :||......|....:||     .||...||..:|
 Worm   376 GLSFDPQELLNPA----QLTSEAEIQKEASTSIGISNPLAESGSDTDL-----LINLPKNSEADL 431

  Fly   424 GLGDGCRRESESSDSILLSPEASKATEAVEFIAEHLRNEDLYIQTREDWKYVAMVIDRLQLYIFF 488
                     ||.|:::.: |::.|..:..:.....|..:.|:|: |..:.:|..|      |:|.
 Worm   432 ---------SERSETLGM-PDSEKTQKESQKKMRKLEIQLLHIK-RFAFFFVIFV------YLFA 479

  Fly   489 IVTTAGT 495
            |:....|
 Worm   480 ILLVLAT 486

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nAChRbeta1NP_523927.2 LIC 8..500 CDD:273305 127/527 (24%)
Neur_chan_LBD 28..236 CDD:280998 60/233 (26%)
Neur_chan_memb 243..498 CDD:280999 58/265 (22%)
lgc-26NP_503167.1 LGIC_ECD_cation 52..256 CDD:349790 50/207 (24%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3645
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.810

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