DRSC/TRiP Functional Genomics Resources

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Protein Alignment nAChRbeta1 and lev-1

DIOPT Version :9

Sequence 1:NP_523927.2 Gene:nAChRbeta1 / 38545 FlyBaseID:FBgn0000038 Length:521 Species:Drosophila melanogaster
Sequence 2:NP_001255705.1 Gene:lev-1 / 178269 WormBaseID:WBGene00002974 Length:507 Species:Caenorhabditis elegans


Alignment Length:529 Identity:248/529 - (46%)
Similarity:332/529 - (62%) Gaps:65/529 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 SWLLCSILVLVAFSL--VSASED---EERLVRDLFRGYNKLIRPVQNMTQ-KVGVRFGLAFVQLI 65
            :||  ..||.:|.||  .|..||   |:||:.|||||||.|::||:|.:: .:.|:.|:..|.||
 Worm    14 TWL--GFLVFLAVSLRNHSTCEDIDAEDRLMVDLFRGYNSLVQPVRNRSELPMIVKIGMQLVLLI 76

  Fly    66 NVNEKNQIMKSNVWLRLVWYDYQLQWDEADYGGIGVLRLPPDKVWKPDIVLFNNADGNYEVRYKS 130
            ||:||.|:|.:||||.:.|.|:||:||..||..|..:|:.|:|||.|||||||||||||||.:..
 Worm    77 NVDEKEQVMHTNVWLTMKWDDFQLKWDPRDYANITQIRVAPEKVWLPDIVLFNNADGNYEVSFMC 141

  Fly   131 NVLIYPTGEVLWVPPAIYQSSCTIDVTYFPFDQQTCIMKFGSWTFNGDQVSLALYNNKNFVDLSD 195
            ||||..||.|||||||||:|||.|||.:||||.|.|.:.|||||:|.|::.|....:.. ||.|:
 Worm   142 NVLILSTGTVLWVPPAIYKSSCIIDVEFFPFDDQLCSLTFGSWTYNRDEIKLDFLTSDR-VDFSE 205

  Fly   196 YWKSGTWDIIEVPAYLNVYEGDSNHPTETDITFYIIIRRKTLFYTVNLILPTVLISFLCVLVFYL 260
            |..|..||:::.||.|.        ...:.|.|.|.||||||||||.|||||||::||.|.||||
 Worm   206 YSTSSIWDMMDGPAVLT--------SDRSRIEFQIRIRRKTLFYTVVLILPTVLMAFLNVTVFYL 262

  Fly   261 PAEAGEKVTLGISILLSLVVFLLLVSKILPPTSLVLPLIAKYLLFTFIMNTVSILVTVIIINWNF 325
            |..:|||:.|.:::|||:|||||||||||||||..:||:|||||.||::|.::|:||.||.|..|
 Worm   263 PTASGEKMGLTMNVLLSIVVFLLLVSKILPPTSSSIPLVAKYLLLTFVLNIITIMVTTIICNIYF 327

  Fly   326 RGPRTHRMPMYIRSIFLHYLPAFLFMKRPRKTRL-----RWMMEMPGMSMPAHPHPSYGSPAELP 385
            |.|.|||:|.::|.:||..||..:.|:||.:..:     |.::| .|.|:..:|..|        
 Worm   328 RSPITHRLPPWVRKVFLDILPLLMCMQRPHRKNVIQRSHRRLLE-TGPSVEENPMRS-------- 383

  Fly   386 KHISAIGGKQSKMEVMELSDLHHPNCKINRKVNSGGELGLGDGCRRESESSDSI--LLSPEASKA 448
                   |:            |||.|:....         .|.|||....||.:  .|||||.:|
 Worm   384 -------GE------------HHPLCRHTHN---------QDSCRRVRIQSDELDDELSPEAQRA 420

  Fly   449 TEAVEFIAEHLRNEDLYIQTREDWKYVAMVIDRLQLYIFFIVTTAGTVGILMDAPHIFEYVDQD- 512
            .:|:|||.|:.|:|::..|.|:|||::|.|:||..||.||..|..||:||:..||.:||..|:: 
 Worm   421 IDAIEFITENRRDEEITKQFRDDWKFIASVVDRFLLYGFFGATVGGTIGIIFTAPSVFETFDENA 485

  Fly   513 ---RIIEIY 518
               ::.::|
 Worm   486 TLVKLKQLY 494

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nAChRbeta1NP_523927.2 LIC 8..500 CDD:273305 242/504 (48%)
Neur_chan_LBD 28..236 CDD:280998 109/208 (52%)
Neur_chan_memb 243..498 CDD:280999 114/261 (44%)
lev-1NP_001255705.1 LIC 15..474 CDD:273305 242/506 (48%)
Neur_chan_LBD 38..238 CDD:280998 109/208 (52%)
Neur_chan_memb 245..470 CDD:280999 114/261 (44%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 212 1.000 Domainoid score I1614
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 473 1.000 Inparanoid score I828
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG29100
OrthoDB 1 1.010 - - D188416at33208
OrthoFinder 1 1.000 - - FOG0010013
OrthoInspector 1 1.000 - - otm14101
orthoMCL 1 0.900 - - OOG6_112323
Panther 1 1.100 - - O PTHR18945
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X7649
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
1211.980

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