DRSC/TRiP Functional Genomics Resources

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Protein Alignment nAChRbeta1 and cup-4

DIOPT Version :9

Sequence 1:NP_523927.2 Gene:nAChRbeta1 / 38545 FlyBaseID:FBgn0000038 Length:521 Species:Drosophila melanogaster
Sequence 2:NP_498710.2 Gene:cup-4 / 176104 WormBaseID:WBGene00000845 Length:433 Species:Caenorhabditis elegans


Alignment Length:374 Identity:80/374 - (21%)
Similarity:151/374 - (40%) Gaps:80/374 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly    23 SASEDEERLVRDLFRGYNKLIRPVQNMT--QKVGVRFGLAFVQLINVNEKNQIMKSNVWLRLVWY 85
            |.||.:..|.:.:|||||...||::|.:  ..|.|.:.:..|. ||..|:...:..::::|  |:
 Worm    43 SYSEHQSALEQKIFRGYNPKNRPMKNASFPTIVDVHWHIIHVS-INQREQTMTVHGHIYMR--WF 104

  Fly    86 DYQLQWDEADYGGIGVLRLPPDKVWKPDIVLFNNADG---NYEVRYKSNVLIYPTG----EVLWV 143
            |..|.||..|:..|...|:...:||:|.|.:.|:|.|   .::....::|:|...|    :|...
 Worm   105 DEFLVWDPKDFNNIQYARVKKWQVWQPKIKVSNSASGLGSAFDFSTSAHVIIQMMGKDRAKVEMY 169

  Fly   144 PPAIYQSSCTIDVTYFPFDQQTC-----------------------IMKFGSW----------TF 175
            |....:..|..|.|.:|:|...|                       .:.|| |          .|
 Worm   170 PTFSIKVGCAFDFTDYPYDLNKCAINLFSTSTMADVQLQNLYAIPPTLSFG-WEEQKMKRIISDF 233

  Fly   176 NGDQVSLA--LYNNKNFVD---LSDYWKSGTWDIIEVPAYLNVYEGDSNHPTETDITFYIIIRRK 235
            ....||.:  .|.|.|...   ::.:....||.::.|                 .::|   :|..
 Worm   234 KIQNVSSSALYYTNGNITSSAPITGFDLGSTWSMLAV-----------------TVSF---VRHS 278

  Fly   236 TLFYTVNLILPTVLISFLCVLVFYLPAEAGEKVTLGISILLSLVVFLLLVSKILPPTSLVLPLIA 300
            .||... ::.|.::::.|..:.|::.:.:...:.:.:...:.|:....||.| ||.:...:|...
 Worm   279 PLFEAA-VVTPCIVVASLISMTFFIDSLSSTFLLMMLHFYVQLIFLHDLVEK-LPLSVSEIPFCI 341

  Fly   301 KYLLFTFIMNTVS-ILVTVIIINWNFRGPRTHRMPMYIRSIFL--HYLP 346
            |.:......|.:: :|.:.::....::.|    :|..:..||:  .|:|
 Worm   342 KLIGILMYTNGLTLVLHSSLLCGSYYKCP----VPQQLNKIFVIEEYIP 386

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nAChRbeta1NP_523927.2 LIC 8..500 CDD:273305 80/374 (21%)
Neur_chan_LBD 28..236 CDD:280998 56/254 (22%)
Neur_chan_memb 243..498 CDD:280999 19/107 (18%)
cup-4NP_498710.2 Neur_chan_LBD 48..>222 CDD:280998 44/177 (25%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3645
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.810

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