DRSC/TRiP Functional Genomics Resources

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Protein Alignment nAChRbeta1 and LOC101732933

DIOPT Version :9

Sequence 1:NP_523927.2 Gene:nAChRbeta1 / 38545 FlyBaseID:FBgn0000038 Length:521 Species:Drosophila melanogaster
Sequence 2:XP_031754974.1 Gene:LOC101732933 / 101732933 -ID:- Length:498 Species:Xenopus tropicalis


Alignment Length:512 Identity:212/512 - (41%)
Similarity:318/512 - (62%) Gaps:50/512 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly    10 LCSILVLVAFSLVSASEDEERLVRDLFRGYNKLIRPVQNMTQKVGVRFGLAFVQLINVNEKNQIM 74
            :|..|:.::.... .|..|.||..||.:.||..||||.|::..|.:.|.::..||:.|:|.||||
 Frog    20 ICFFLLFLSAGFF-CSNVEHRLYEDLLKSYNPYIRPVMNVSDPVILHFEVSMSQLVKVDEVNQIM 83

  Fly    75 KSNVWLRLVWYDYQLQWDEADYGGIGVLRLPPDKVWKPDIVLFNNADGNYEVRYKSNVLIYPTGE 139
            ::|:|||.:|.||:|:|:.:|||||..||:|..::|:|||||:|||.|.:.|..|:..::..:|:
 Frog    84 ETNLWLRHLWNDYKLKWNPSDYGGIEFLRIPASQIWRPDIVLYNNAVGAFHVDDKAKAVVRYSGD 148

  Fly   140 VLWVPPAIYQSSCTIDVTYFPFDQQTCIMKFGSWTFNGDQVSLALYNNKNFVDLSDYWKSGTWDI 204
            |.|:||||::|||.||||:||||.|.|.:||||||::..:::|.:..:|  ::|.::|:||.|.|
 Frog   149 VTWIPPAIFKSSCKIDVTFFPFDYQNCSLKFGSWTYDKAKINLVMIGSK--INLKEFWESGEWVI 211

  Fly   205 IEVPAY---------LNVYEGDSNHPTETDITFYIIIRRKTLFYTVNLILPTVLISFLCVLVFYL 260
            |..|.|         :.:|:         |||:.:.|||..||||:.:|:|.:|||.|.:|||||
 Frog   212 INAPGYKHEIKYNCCVEIYQ---------DITYSLYIRRLPLFYTIYIIIPCLLISCLTILVFYL 267

  Fly   261 PAEAGEKVTLGISILLSLVVFLLLVSKILPPTSLVLPLIAKYLLFTFIMNTVSILVTVIIINWNF 325
            |::.||||||.:|:||||.||||::::|:|.||||:|||.:|||||.|..|:||::||.::|.::
 Frog   268 PSDCGEKVTLCMSVLLSLTVFLLVITEIIPSTSLVIPLIGEYLLFTMIFVTLSIVITVFVLNVHY 332

  Fly   326 RGPRTHRMPMYIRSIFLHYLPAFLFMKRPRKTRLRWMMEMPGMSMPAHPHPSY--GSPAELPKHI 388
            |.|:||.||.:::..|||.||..:||.||.|        .|....|    .:|  .|.:|:....
 Frog   333 RTPKTHTMPHWVKRFFLHLLPKVMFMTRPEK--------QPYALKP----QAYLDISSSEIRSCQ 385

  Fly   389 SAIGGKQSKMEVMELSDLHHPN--CKINR--KVNSGGELGLGDGCRRESESSDSILLSPEASKAT 449
            ..:..:.|.....:|..|:..:  |.:.|  .:.|...|||..|..          ||||..:|.
 Frog   386 DQLFYQDSSCACGQLKRLYTSDTACNVTRGSSLESMYNLGLHSGSG----------LSPEIREAI 440

  Fly   450 EAVEFIAEHLRNEDLYIQTREDWKYVAMVIDRLQLYIFFIVTTAGTVGILMDAPHIF 506
            |.|.||||:::.:|...:.::|||||||||||:.|::|.:|...||.|:.:. |.:|
 Frog   441 EDVHFIAENMKAQDEAKEVQDDWKYVAMVIDRIFLWVFVLVCILGTAGLFLQ-PLLF 496

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nAChRbeta1NP_523927.2 LIC 8..500 CDD:273305 210/504 (42%)
Neur_chan_LBD 28..236 CDD:280998 95/216 (44%)
Neur_chan_memb 243..498 CDD:280999 107/260 (41%)
LOC101732933XP_031754974.1 LIC 34..491 CDD:273305 208/489 (43%)
LGIC_ECD_nAChR_A3 37..243 CDD:349817 95/216 (44%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D188416at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.010

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