DRSC/TRiP Functional Genomics Resources

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Protein Alignment nAChRbeta1 and chrng

DIOPT Version :9

Sequence 1:NP_523927.2 Gene:nAChRbeta1 / 38545 FlyBaseID:FBgn0000038 Length:521 Species:Drosophila melanogaster
Sequence 2:NP_001241879.1 Gene:chrng / 100536659 ZFINID:ZDB-GENE-030131-3805 Length:540 Species:Danio rerio


Alignment Length:534 Identity:183/534 - (34%)
Similarity:277/534 - (51%) Gaps:58/534 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MESSCKSWLLCSILVLVAFSLVSASEDEERLVRDLFRGYNKLIRPVQNMTQKVGVRFGLAFVQLI 65
            |:.:..|.::...::|..|| .:....|..|.|||..||||.||||::....:.|:..:....||
Zfish     1 MDQNLSSKIIWLWILLFRFS-GALCNLEGSLHRDLMVGYNKNIRPVESHEDIIDVKIKMTLTNLI 64

  Fly    66 NVNEKNQIMKSNVWLRLVWYDYQLQWDEAD----YGGIGVLRLPPDKVWKPDIVLFNNADGNYEV 126
            ::|||.:.:.:.||:.:.|.||:|:|....    |..|..:|||...:|.|||.|.||.||.:||
Zfish    65 SLNEKEETLTTCVWIEMQWRDYRLRWANRTGFEVYENITRMRLPSKTIWLPDIGLENNVDGRFEV 129

  Fly   127 RYKSNVLIYPTGEVLWVPPAIYQSSCTIDVTYFPFDQQTCIMKFGSWTFNGDQVSLALYNNKNF- 190
            ...:|.||.|.|.|.|:|||||:|||.|.|.|||||.|.|.|.|.|.|:|.::::|.|.:..|. 
Zfish   130 ALYANTLIDPDGSVYWLPPAIYRSSCAIKVNYFPFDWQNCSMVFRSQTYNSNEITLMLSDEDNVT 194

  Fly   191 -----VDLSDYWKSGTWDIIEVPAYLNV---YEGDSNHPTETDITFYIIIRRKTLFYTVNLILPT 247
                 :|...:.::|.|.|...||...:   |..|.....|  |.|::||:||.|||.:|:|:|.
Zfish   195 MEWIEIDPEAFTENGEWMIKHRPAKKVINKRYRPDELEHQE--IIFFLIIQRKPLFYVINIIVPC 257

  Fly   248 VLISFLCVLVFYLPAEA-GEKVTLGISILLSLVVFLLLVSKILPPTSLVLPLIAKYLLFTFIMNT 311
            ||.|.|.:||::|||:| |:|.|:.|.|||...|||.|::|.:|.||..:|||.|||:|...:.|
Zfish   258 VLFSSLGLLVYFLPAKAGGQKCTMTICILLGQTVFLFLIAKKVPETSQAVPLIGKYLMFVMSVTT 322

  Fly   312 VSILVTVIIINWNFRGPRTHRMPMYIRSIFLHYLPAFLFMKRPRKTRLRWMMEMP---------- 366
            ::::..|:::|.:.|.|.||.|...||.:.|:.||..|     |.|..||..|..          
Zfish   323 ITVMNCVVVLNVSLRTPNTHPMSNTIRKVLLNILPRVL-----RMTMQRWTPEQEEGDFKMFALG 382

  Fly   367 -GMSMPAHPHPSYGSPAELPKHISAIGGKQSKMEVMELSDLHHPNCKINRKVNSGGEL------- 423
             |..:......|.|..|:..:::.    :.::.|:|           .:|.....|.|       
Zfish   383 NGTPLRRRRRSSLGLIAKADEYMF----RTARSELM-----------FSRLKERKGLLKNTLEKI 432

  Fly   424 --GLGDGCRRESESSDSILLSPEASKATEAVEFIAEHLRNEDLYIQTREDWKYVAMVIDRLQLYI 486
              |||....::.|.| ....|||..:...:.:.|||..::::.:....|:|..||.||||:..::
Zfish   433 QNGLGGNTAQDLECS-LAAASPEVQQCVSSCKHIAESTKHQNDFQSKNEEWFLVARVIDRMCFFV 496

  Fly   487 FFIVTTAGTVGILM 500
            ..::...||:||.:
Zfish   497 MALLFILGTIGIFL 510

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nAChRbeta1NP_523927.2 LIC 8..500 CDD:273305 181/525 (34%)
Neur_chan_LBD 28..236 CDD:280998 88/220 (40%)
Neur_chan_memb 243..498 CDD:280999 83/275 (30%)
chrngNP_001241879.1 LIC 21..511 CDD:273305 178/513 (35%)
Neur_chan_LBD 27..246 CDD:280998 88/220 (40%)
Neur_chan_memb 253..509 CDD:280999 84/276 (30%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3645
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.810

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