DRSC/TRiP Functional Genomics Resources

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Protein Alignment nAChRbeta1 and chrna4

DIOPT Version :9

Sequence 1:NP_523927.2 Gene:nAChRbeta1 / 38545 FlyBaseID:FBgn0000038 Length:521 Species:Drosophila melanogaster
Sequence 2:XP_031749826.1 Gene:chrna4 / 100135106 XenbaseID:XB-GENE-5994598 Length:762 Species:Xenopus tropicalis


Alignment Length:591 Identity:231/591 - (39%)
Similarity:323/591 - (54%) Gaps:124/591 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly    28 EERLVRDLFRGYNKLIRPVQNMTQKVGVRFGLAFVQLINVNEKNQIMKSNVWLRLVWYDYQLQWD 92
            ||||::.||.||||..|||.|::..|.|||||:..|||:|:||||:|.:|||::..|:||:|:||
 Frog   170 EERLLKGLFSGYNKWSRPVANISDAVMVRFGLSIAQLIDVDEKNQMMTTNVWVKQEWHDYKLRWD 234

  Fly    93 EADYGGIGVLRLPPDKVWKPDIVLFNNADGNYEVRYKSNVLIYPTGEVLWVPPAIYQSSCTIDVT 157
            ..:|..:..:|:|.:.:|:|||||:|||||::.|.:.:...::..|.:.|.|||||:|||:||||
 Frog   235 PLEYENVTSIRIPSELIWRPDIVLYNNADGDFAVTHLTKAHLFHDGRIKWTPPAIYKSSCSIDVT 299

  Fly   158 YFPFDQQTCIMKFGSWTFNGDQVSLALYNNKNFVDLSDYWKSGTWDIIEVPAYLNVYEGDSNHPT 222
            :||||||.|.|||||||:  |:..:.|.:..:.||..|||:||.|.|:......|:.:.:.....
 Frog   300 FFPFDQQNCTMKFGSWTY--DRAKIDLISMHSHVDQLDYWESGEWVIVNAVGNYNIKKYECCTEI 362

  Fly   223 ETDITFYIIIRRKTLFYTVNLILPTVLISFLCVLVFYLPAEAGEKVTLGISILLSLVVFLLLVSK 287
            .:|||:..||||..||||:|||:|.:|||.|.|||||||:|.|||:||.||:||||.|||||:::
 Frog   363 YSDITYSFIIRRLPLFYTINLIIPCLLISCLTVLVFYLPSECGEKITLCISVLLSLTVFLLLITE 427

  Fly   288 ILPPTSLVLPLIAKYLLFTFIMNTVSILVTVIIINWNFRGPRTHRMPMYIRSIFLHYLPAFLFMK 352
            |:|.||||:|||.:|||||.|..|:||::||.::|.:.|.||||.||.::|..||..:|..||||
 Frog   428 IIPSTSLVIPLIGEYLLFTMIFVTLSIIITVFVLNVHHRSPRTHTMPAWVRRTFLDVVPRVLFMK 492

  Fly   353 RPRKTRLRWMMEMPGMSMPA---HPHPSYGSPAEL----------------PKHISAI------- 391
            ||.|...:.::|    |:.|   :|.|...|.||:                |...|:.       
 Frog   493 RPAKDNCKKLIE----SLHARSFNPPPRLWSEAEIEPAFASSSSASPTSQRPSPTSSCCHQLEQS 553

  Fly   392 ----------GGKQS--------------KMEVMELSD--------------------------- 405
                      .|:.|              |.|...||:                           
 Frog   554 PNAQVFCKSPSGQYSMLCEESALTSCPSPKPETKLLSEAQPNLMPKVRSVSVQQMYTPKEANEGA 618

  Fly   406 ------------LHHPNCKINRKVNSGGELGLGDG-------------CRRESESS--------- 436
                        ||....:.|.:.:|......|:|             |:.:|:..         
 Frog   619 VRCRSRSIQYCFLHEDFSQANGQASSSPVAQKGNGNEPQPSSHTSPCTCKPKSQEKPVDPSQGAK 683

  Fly   437 -------DSILLSPEASKATEAVEFIAEHLRNEDLYIQTREDWKYVAMVIDRLQLYIFFIVTTAG 494
                   ..:|:||....|.|.|.:||:|||.||.....::|||||||||||:.|::|.||...|
 Frog   684 TVNAKEHHVLLMSPSLKLAIEGVHYIADHLRAEDADFSVKQDWKYVAMVIDRIFLWMFIIVCLLG 748

  Fly   495 TVGILM 500
            |||:.:
 Frog   749 TVGLFL 754

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nAChRbeta1NP_523927.2 LIC 8..500 CDD:273305 231/589 (39%)
Neur_chan_LBD 28..236 CDD:280998 100/207 (48%)
Neur_chan_memb 243..498 CDD:280999 125/372 (34%)
chrna4XP_031749826.1 LGIC_ECD 170..376 CDD:355788 100/207 (48%)
Neur_chan_memb 383..753 CDD:397193 126/373 (34%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 1 1.000 - - H592
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D188416at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
33.010

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