Sequence 1: | NP_523927.2 | Gene: | nAChRbeta1 / 38545 | FlyBaseID: | FBgn0000038 | Length: | 521 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | XP_031749826.1 | Gene: | chrna4 / 100135106 | XenbaseID: | XB-GENE-5994598 | Length: | 762 | Species: | Xenopus tropicalis |
Alignment Length: | 591 | Identity: | 231/591 - (39%) |
---|---|---|---|
Similarity: | 323/591 - (54%) | Gaps: | 124/591 - (20%) |
- Green bases have known domain annotations that are detailed below.
Fly 28 EERLVRDLFRGYNKLIRPVQNMTQKVGVRFGLAFVQLINVNEKNQIMKSNVWLRLVWYDYQLQWD 92
Fly 93 EADYGGIGVLRLPPDKVWKPDIVLFNNADGNYEVRYKSNVLIYPTGEVLWVPPAIYQSSCTIDVT 157
Fly 158 YFPFDQQTCIMKFGSWTFNGDQVSLALYNNKNFVDLSDYWKSGTWDIIEVPAYLNVYEGDSNHPT 222
Fly 223 ETDITFYIIIRRKTLFYTVNLILPTVLISFLCVLVFYLPAEAGEKVTLGISILLSLVVFLLLVSK 287
Fly 288 ILPPTSLVLPLIAKYLLFTFIMNTVSILVTVIIINWNFRGPRTHRMPMYIRSIFLHYLPAFLFMK 352
Fly 353 RPRKTRLRWMMEMPGMSMPA---HPHPSYGSPAEL----------------PKHISAI------- 391
Fly 392 ----------GGKQS--------------KMEVMELSD--------------------------- 405
Fly 406 ------------LHHPNCKINRKVNSGGELGLGDG-------------CRRESESS--------- 436
Fly 437 -------DSILLSPEASKATEAVEFIAEHLRNEDLYIQTREDWKYVAMVIDRLQLYIFFIVTTAG 494
Fly 495 TVGILM 500 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
nAChRbeta1 | NP_523927.2 | LIC | 8..500 | CDD:273305 | 231/589 (39%) |
Neur_chan_LBD | 28..236 | CDD:280998 | 100/207 (48%) | ||
Neur_chan_memb | 243..498 | CDD:280999 | 125/372 (34%) | ||
chrna4 | XP_031749826.1 | LGIC_ECD | 170..376 | CDD:355788 | 100/207 (48%) |
Neur_chan_memb | 383..753 | CDD:397193 | 126/373 (34%) |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 0 | 0.000 | Not matched by this tool. | |||
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 1 | 1.000 | - | - | H592 | |
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 1 | 1.010 | - | - | D188416at33208 | |
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 0 | 0.000 | Not matched by this tool. | |||
RoundUp | 0 | 0.000 | Not matched by this tool. | |||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 1 | 1.000 | - | - | ||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
3 | 3.010 |