DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment nAChRbeta1 and chrnb2

DIOPT Version :9

Sequence 1:NP_523927.2 Gene:nAChRbeta1 / 38545 FlyBaseID:FBgn0000038 Length:521 Species:Drosophila melanogaster
Sequence 2:NP_001093684.1 Gene:chrnb2 / 100101688 XenbaseID:XB-GENE-854457 Length:499 Species:Xenopus tropicalis


Alignment Length:499 Identity:211/499 - (42%)
Similarity:296/499 - (59%) Gaps:68/499 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly    25 SEDEERLVRDLF--RGYNKLIRPVQNMTQKVGVRFGLAFVQLINVNEKNQIMKSNVWLRLVWYDY 87
            ::.|||||..|.  ..|||||||..|.:::|.|:..::..|||:|:|:.|||.:||||...|.||
 Frog    26 TDTEERLVEHLLDPSRYNKLIRPATNGSEQVTVQLMVSLAQLISVHEREQIMTTNVWLTQEWEDY 90

  Fly    88 QLQWDEADYGGIGVLRLPPDKVWKPDIVLFNNADGNYEVRYKSNVLIYPTGEVLWVPPAIYQSSC 152
            :|.||.|::..:..:|||...:|.||:||:|||||.|||.:.||.::...|.:.|:|||||:|:|
 Frog    91 RLTWDPAEFDDMKKVRLPSKHIWLPDVVLYNNADGMYEVSFYSNAVVSHDGSIFWLPPAIYKSAC 155

  Fly   153 TIDVTYFPFDQQTCIMKFGSWTFNGDQVSLALYNNKNFVDLSDYWKSGTWDIIEVPAYLNVYEGD 217
            .|:|.:||||||.|.|||.|||:  |:..|.|....:...|.|:..||.||||.:|...|....|
 Frog   156 KIEVKHFPFDQQNCTMKFRSWTY--DRTELDLVLRSDVASLDDFTPSGEWDIIALPGRRNENPND 218

  Fly   218 SNHPTETDITFYIIIRRKTLFYTVNLILPTVLISFLCVLVFYLPAEAGEKVTLGISILLSLVVFL 282
            |   |..|||:..|||||.||||:|||:|.:||:.|.:||||||::.|||:||.||:||:|.|||
 Frog   219 S---TYVDITYDFIIRRKPLFYTINLIIPCILITSLAILVFYLPSDCGEKMTLCISVLLALTVFL 280

  Fly   283 LLVSKILPPTSLVLPLIAKYLLFTFIMNTVSILVTVIIINWNFRGPRTHRMPMYIRSIFLHYLPA 347
            ||:|||:|||||.:||:.|||:||.::.|.||:.:|.::|.:.|.|.||.||.:::.:||..||.
 Frog   281 LLISKIVPPTSLDVPLVGKYLMFTMVLVTFSIVTSVCVLNVHHRSPTTHTMPPWVKVVFLDKLPT 345

  Fly   348 FLFMKRPR----KTRLR------------WMMEMPGMSMPAHPHPS----YGSP-AELPKHISAI 391
            .||||:||    :.|||            :.:.....|...:.:.:    ||:. :|||:.::..
 Frog   346 LLFMKQPRQNCARQRLRQQRQSQERAAGSFFLRDGARSCTCYVNQASVKKYGAQLSELPEGVNGF 410

  Fly   392 GGKQSKMEVMELSDLHHPNCKINRKVNSGGELGLGDGCRRESESSDSILLSPEASKATEAVEFIA 456
            ..:|.|:.          .|.          .||                    .:|.:.|.|||
 Frog   411 RDRQGKVR----------QCL----------CGL--------------------QEAVDGVRFIA 435

  Fly   457 EHLRNEDLYIQTREDWKYVAMVIDRLQLYIFFIVTTAGTVGILM 500
            :|:::||......|||||||||||||.|:||..|...||:|:.:
 Frog   436 DHMKSEDDDQSVSEDWKYVAMVIDRLFLWIFVFVCVFGTIGMFL 479

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nAChRbeta1NP_523927.2 LIC 8..500 CDD:273305 211/497 (42%)
Neur_chan_LBD 28..236 CDD:280998 100/209 (48%)
Neur_chan_memb 243..498 CDD:280999 104/275 (38%)
chrnb2NP_001093684.1 LIC 29..479 CDD:273305 211/494 (43%)
LGIC_ECD_nAChR_B2 31..234 CDD:349826 98/207 (47%)
Cys-loop 155..169 CDD:349826 9/13 (69%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D188416at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.010

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