Sequence 1: | NP_523927.2 | Gene: | nAChRbeta1 / 38545 | FlyBaseID: | FBgn0000038 | Length: | 521 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_001093684.1 | Gene: | chrnb2 / 100101688 | XenbaseID: | XB-GENE-854457 | Length: | 499 | Species: | Xenopus tropicalis |
Alignment Length: | 499 | Identity: | 211/499 - (42%) |
---|---|---|---|
Similarity: | 296/499 - (59%) | Gaps: | 68/499 - (13%) |
- Green bases have known domain annotations that are detailed below.
Fly 25 SEDEERLVRDLF--RGYNKLIRPVQNMTQKVGVRFGLAFVQLINVNEKNQIMKSNVWLRLVWYDY 87
Fly 88 QLQWDEADYGGIGVLRLPPDKVWKPDIVLFNNADGNYEVRYKSNVLIYPTGEVLWVPPAIYQSSC 152
Fly 153 TIDVTYFPFDQQTCIMKFGSWTFNGDQVSLALYNNKNFVDLSDYWKSGTWDIIEVPAYLNVYEGD 217
Fly 218 SNHPTETDITFYIIIRRKTLFYTVNLILPTVLISFLCVLVFYLPAEAGEKVTLGISILLSLVVFL 282
Fly 283 LLVSKILPPTSLVLPLIAKYLLFTFIMNTVSILVTVIIINWNFRGPRTHRMPMYIRSIFLHYLPA 347
Fly 348 FLFMKRPR----KTRLR------------WMMEMPGMSMPAHPHPS----YGSP-AELPKHISAI 391
Fly 392 GGKQSKMEVMELSDLHHPNCKINRKVNSGGELGLGDGCRRESESSDSILLSPEASKATEAVEFIA 456
Fly 457 EHLRNEDLYIQTREDWKYVAMVIDRLQLYIFFIVTTAGTVGILM 500 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
nAChRbeta1 | NP_523927.2 | LIC | 8..500 | CDD:273305 | 211/497 (42%) |
Neur_chan_LBD | 28..236 | CDD:280998 | 100/209 (48%) | ||
Neur_chan_memb | 243..498 | CDD:280999 | 104/275 (38%) | ||
chrnb2 | NP_001093684.1 | LIC | 29..479 | CDD:273305 | 211/494 (43%) |
LGIC_ECD_nAChR_B2 | 31..234 | CDD:349826 | 98/207 (47%) | ||
Cys-loop | 155..169 | CDD:349826 | 9/13 (69%) |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 0 | 0.000 | Not matched by this tool. | |||
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 1 | 1.010 | - | - | D188416at33208 | |
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 0 | 0.000 | Not matched by this tool. | |||
RoundUp | 0 | 0.000 | Not matched by this tool. | |||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
1 | 1.010 |