DRSC/TRiP Functional Genomics Resources

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Protein Alignment slow and lrp13

DIOPT Version :10

Sequence 1:NP_647898.3 Gene:slow / 38540 FlyBaseID:FBgn0035539 Length:512 Species:Drosophila melanogaster
Sequence 2:XP_068074315.1 Gene:lrp13 / 562438 ZFINID:ZDB-GENE-130729-1 Length:1355 Species:Danio rerio


Alignment Length:212 Identity:55/212 - (25%)
Similarity:89/212 - (41%) Gaps:41/212 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly   314 CTGWSRENPRSD---SCMKPICSARCQNGGNC---TAPSTCSCPTGF----TGRFCEQDVDECQT 368
            |.|.:.....||   ||....||.:.:...:|   .|.:.|.|..|:    .|..| .||||| .
Zfish   447 CNGVTNCLDGSDE
GGSCQTEKCSEQLKCAQDCHSTPAGARCGCRMGYKPVDDGLRC-ADVDEC-V 509

  Fly   369 EKP--CDQQCINTHGSYFCRCRQGFVLQSDQQSCKKVSTNADDAFEARDLENDIDDTDAEVATRL 431
            |:|  |..:|.||.||:.|.|..|:||:.|..|||...    :.:....:::::    ..:..|.
Zfish   510 ERPNICSHRCNNTLGSFQCSCSHGYVLEPDGHSCKITG----EPYLLASVQSEV----FLLGLRS 566

  Fly   432 QKIEKSLANERVHTNEL----QKSLQATYSV---VDTLK----------SRLSTLEKQAQDVSRL 479
            ..::..|:.|:.....|    ||  |..|.:   .||:|          :.|..:...:..|..:
Zfish   567 SSLDILLSAEKRFVLSLDYDWQK--QRVYWINLNTDTIKWLSLDQKNKGTFLKGISADSLAVDWV 629

  Fly   480 QTNLYKTESRTNKLEGM 496
            ..|||.|:|..:::..:
Zfish   630 ARNLYWTDSENSQINAV 646

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
slowNP_647898.3 EMI 245..319 CDD:462204 2/4 (50%)
EGF_CA <336..360 CDD:238011 6/30 (20%)
EGF_CA 362..401 CDD:214542 20/40 (50%)
lrp13XP_068074315.1 LDLa 36..71 CDD:238060
LDLa 75..110 CDD:238060
LDLa 119..149 CDD:238060
LDLa 196..224 CDD:238060
LDLa 228..263 CDD:238060
LDLa 272..302 CDD:238060
LDLa 307..341 CDD:238060
LDLa 352..381 CDD:238060
LDLa 388..423 CDD:238060
LDLa 428..459 CDD:197566 3/11 (27%)
FXa_inhibition 508..543 CDD:464251 15/35 (43%)
LY <623..649 CDD:214531 6/24 (25%)
Ldl_recept_b 681..719 CDD:459654
LY 703..745 CDD:214531
FXa_inhibition 1131..1163 CDD:464251
LDLa 1171..1203 CDD:197566
Blue background indicates that the domain is not in the aligned region.

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