DRSC/TRiP Functional Genomics Resources

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Protein Alignment slow and Egfl6

DIOPT Version :10

Sequence 1:NP_647898.3 Gene:slow / 38540 FlyBaseID:FBgn0035539 Length:512 Species:Drosophila melanogaster
Sequence 2:NP_001101724.1 Gene:Egfl6 / 317470 RGDID:1563321 Length:516 Species:Rattus norvegicus


Alignment Length:160 Identity:53/160 - (33%)
Similarity:80/160 - (50%) Gaps:24/160 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly   266 RPTWKHVATPCQPPTFSGQKCT--RVQVVHEQAYRDVIDH---KTAQQMTYDCCTGWSRENPRSD 325
            :|.| .:|.|...|..:|...|  |...:...|::..:.|   |||      ||.||.|   .|.
  Rat     2 QPPW-GLALPLLLPWVAGGVGTSPRDYWLPALAHQPGVCHYGTKTA------CCYGWKR---NSK 56

  Fly   326 SCMKPICSARCQNGGNCTAPSTCSCPTGFTGRFCEQDVDECQTE-KPCDQQCINTHGSYFCRCRQ 389
            ...:.:|..||: .|.|..|:.|.|..|:||:.|.|||:||..: :||..:|:||||||.|.|..
  Rat    57 GVCEAVCEPRCK-FGECVGPNKCRCFPGYTGKTCSQDVNECAFKPRPCQHRCVNTHGSYKCFCLS 120

  Fly   390 GFVLQ-----SDQQSCKKVST--NADDAFE 412
            |.:|.     |:.::|.:::.  :.:|..|
  Rat   121 GHMLLPDATCSNSRTCARINCQYSCEDTAE 150

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
slowNP_647898.3 EMI 245..319 CDD:462204 17/57 (30%)
EGF_CA <336..360 CDD:238011 9/23 (39%)
EGF_CA 362..401 CDD:214542 18/44 (41%)
Egfl6NP_001101724.1 EGF_CA 92..123 CDD:214542 16/30 (53%)
EGF_CA 172..200 CDD:429571
EGF_3 221..256 CDD:463759
MAM <394..507 CDD:99706
Blue background indicates that the domain is not in the aligned region.

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