DRSC/TRiP Functional Genomics Resources

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Protein Alignment slow and svep1

DIOPT Version :10

Sequence 1:NP_647898.3 Gene:slow / 38540 FlyBaseID:FBgn0035539 Length:512 Species:Drosophila melanogaster
Sequence 2:XP_012808841.2 Gene:svep1 / 100493788 XenbaseID:XB-GENE-5996067 Length:3695 Species:Xenopus tropicalis


Alignment Length:341 Identity:70/341 - (20%)
Similarity:105/341 - (30%) Gaps:126/341 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly   132 PPPPMPLSPRYGKGEDNTQDVEFIGVRERGRGYSFVPSVTVT------TAPPPNLNRRSASPGSR 190
            ||||..:|...    |:...:|.......|..|:.  ::|.|      ...||::  |....|:.
 Frog  3349 PPPPTCVSVTC----DSLPYIENAVYTSTGNTYTH--NITFTCNFGYHLVGPPHV--RCLVNGTW 3405

  Fly   191 SSIGTIPPLVPARRGYSYTTTTSSPPVNTITTDNPFETNTIG--------RGYPTDPKEMERRHI 247
            |.     ||...:.      |....|.........:|..|:|        .||..:.:::     
 Frog  3406 SK-----PLPQCKE------TRCEVPQQPENGHAEYENVTVGSTVRYQCQNGYTLEGEDL----- 3454

  Fly   248 CMQQRTVTMPVKRTEVYSRPTWKH-----VATPCQPP-------------TFSGQ----KCTRVQ 290
                         .|..:..||.|     .|.||..|             .:.||    ||.:..
 Frog  3455 -------------AECTTNGTWSHPVPICKANPCPVPFVIPENAILTETDFYVGQKVSIKCRKGY 3506

  Fly   291 VVHEQA---------YRDV----------------------IDHKTAQQMTYDCCTGWSRENPRS 324
            .:..||         :.|.                      :.|:....:||.|.:|:.......
 Frog  3507 QLQGQAVITCNADETWTDANVKCEKISCGPPHTIQNGILRGMYHQFGDVVTYSCYSGYMLLGSFR 3571

  Fly   325 DSCM-----------KPICSARCQNGGNCTAPSTCSCPTGFTGRFCEQDVDECQTEKPCDQQCIN 378
            ..|:           |.:|...|||||.|..|:.||||.|:.||.||:.:        |...|:|
 Frog  3572 SVCLENGTWTAPPSCKAVCRFPCQNGGVCERPNACSCPKGWMGRLCEEPI--------CPLPCLN 3628

  Fly   379 ---THGSYFCRCRQGF 391
               ....:.|.|..|:
 Frog  3629 GGRCTAPFRCECPNGW 3644

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
slowNP_647898.3 EMI 245..319 CDD:462204 20/126 (16%)
EGF_CA <336..360 CDD:238011 14/23 (61%)
EGF_CA 362..401 CDD:214542 6/33 (18%)
svep1XP_012808841.2 VWA 75..250 CDD:459670
Ephrin_rec_like 302..352 CDD:429604
PHA02927 <365..550 CDD:222943
CCP 430..486 CDD:153056
HYR 552..634 CDD:460572
HYR 646..716 CDD:460572
Ephrin_rec_like 1008..1055 CDD:429604
Ephrin_rec_like 1062..1109 CDD:429604
Ephrin_rec_like 1116..1163 CDD:429604
EGF_CA 1198..1232 CDD:238011
EGF_CA 1235..1270 CDD:238011
EGF_CA 1272..1308 CDD:238011
EGF_CA 1311..1346 CDD:238011
EGF_CA 1348..1384 CDD:238011
EGF_CA 1386..1422 CDD:238011
LamG 1422..1625 CDD:473984
Sushi 1631..1688 CDD:459664
CCP 1693..1746 CDD:214478
EGF_3 1752..1786 CDD:463759
PHA02927 <1791..1961 CDD:222943
PHA02639 1904..>2082 CDD:165022
PHA02927 2081..2322 CDD:222943
PHA02817 2321..>2439 CDD:165167
PHA02927 2404..2612 CDD:222943
PHA02927 2518..2773 CDD:222943
CCP 2777..2830 CDD:214478
PHA02927 2830..3061 CDD:222943
CCP 3066..3119 CDD:214478
PHA02927 3119..3355 CDD:222943 4/5 (80%)
PHA02927 3257..3470 CDD:222943 29/157 (18%)
PHA02927 3366..3586 CDD:222943 40/252 (16%)
Blue background indicates that the domain is not in the aligned region.

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