DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment DopEcR and Gpr21

DIOPT Version :10

Sequence 1:NP_647897.2 Gene:DopEcR / 38539 FlyBaseID:FBgn0035538 Length:322 Species:Drosophila melanogaster
Sequence 2:NP_001383750.1 Gene:Gpr21 / 689917 RGDID:1586383 Length:349 Species:Rattus norvegicus


Alignment Length:338 Identity:82/338 - (24%)
Similarity:143/338 - (42%) Gaps:64/338 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly    16 LTKAVLISILGVAIVLSNLLII-----ATYANFKGPTEVINYYLLSLAIADLLCG---------L 66
            |.:.:::..|.|.|:..|:::|     |...|...    .:|::.::|.||||.|         |
  Rat    29 LLEVLIVVFLTVLIISGNIIVIFVFHCAPLLNHHS----TSYFIQTMAYADLLVGVSCLVPSLSL 89

  Fly    67 LVVPFSVYPALTGEWMYGDIVCRFTGYLEVTLWAVSVYTFMWISVDRYLAVRKPLRYETVQTKTR 131
            |..|..:..|:|         |:..|::...|.::|:.:...||:|||:|:.|||.|.|:.|..|
  Rat    90 LYYPLPMEEAMT---------CQVFGFIVSVLKSISMASLACISIDRYIAITKPLTYNTLVTPWR 145

  Fly   132 CQCWMVFTWISAALLCCPPILGYSMP-IENNMTHICMLDWGNMAAYSATLAILVLGPSLISIVHN 195
            .:..:...|:.:.|:..|....:..| ...::...|...|...:.::..:.:.:..|:.:.:...
  Rat   146 LRLCIFLIWLYSTLVFLPSFFHWGKPGYHGDVFRWCAESWHTNSYFTLFIVMTLYAPAALIVCFT 210

  Fly   196 YGYIF---------VMMRKIR-------SGE--PIHDKEYATALAENLSNPSHMMSFALVFAFWV 242
            |..||         :..|:.|       :||  ...||.||            |:.|.:...|:|
  Rat   211 YFNIFRICQQHTKEISERQARFSSQNGETGEAQTCPDKRYA------------MVLFRITSVFYV 263

  Fly   243 SWLPWILLRLYEVVTGDVIQSTLINFAVVWIGILNSFWKILIMTSMSPQFRIALRVFCLTICCKT 307
            .|||:|:..|.|..||  ..|.|.:|...|:.|.|||...:|.:..:..|:..|:....::|...
  Rat   264 LWLPYIIYFLLESSTG--CSSRLASFLTTWLAISNSFCNCIIYSLSNSVFQQGLKGLSESVCTSC 326

  Fly   308 KGRLQAELIGLDP 320
            .....|:    ||
  Rat   327 ASHTTAK----DP 335

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
DopEcRNP_647897.2 7tm_classA_rhodopsin-like 18..289 CDD:410626 75/303 (25%)
TM helix 1 18..43 CDD:410626 6/29 (21%)
TM helix 2 50..76 CDD:410626 10/34 (29%)
TM helix 3 88..118 CDD:410626 10/29 (34%)
TM helix 4 131..150 CDD:410626 3/18 (17%)
TM helix 5 173..198 CDD:410626 2/24 (8%)
TM helix 6 224..254 CDD:410626 9/29 (31%)
TM helix 7 264..289 CDD:410626 8/24 (33%)
Gpr21NP_001383750.1 7tm_classA_rhodopsin-like 31..308 CDD:410626 75/303 (25%)
TM helix 1 31..56 CDD:410626 5/24 (21%)
TM helix 2 64..90 CDD:410626 7/25 (28%)
TM helix 3 102..132 CDD:410626 10/29 (34%)
TM helix 4 145..164 CDD:410626 3/18 (17%)
TM helix 5 188..213 CDD:410626 2/24 (8%)
TM helix 6 245..275 CDD:410626 13/41 (32%)
TM helix 7 283..308 CDD:410626 8/24 (33%)

Return to query results.
Submit another query.