DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment DopEcR and Gpr52

DIOPT Version :9

Sequence 1:NP_001014559.1 Gene:DopEcR / 38539 FlyBaseID:FBgn0035538 Length:322 Species:Drosophila melanogaster
Sequence 2:NP_001276864.1 Gene:Gpr52 / 684623 RGDID:1587949 Length:361 Species:Rattus norvegicus


Alignment Length:300 Identity:81/300 - (27%)
Similarity:143/300 - (47%) Gaps:19/300 - (6%)


- Green bases have known domain annotations that are detailed below.


  Fly    18 KAVLISILGVAIVLSNLLIIATYANFKGPT---EVINYYLLSLAIADLLCGL--LVVPFSVYPAL 77
            :.|:|.:|...|:..||.:|..:  ...|.   ...:|::.::|.||||.|:  ||...|:....
  Rat    43 ETVVIVLLTFLIISGNLTVIFVF--HCAPLLHHYTTSYFIQTMAYADLLVGVTCLVPTLSLLHYS 105

  Fly    78 TGEWMYGDIVCRFTGYLEVTLWAVSVYTFMWISVDRYLAVRKPLRYETVQTKTRCQCWMVFTWIS 142
            ||  ::..:.|:..||:...|.:||:.....||||||||:.|||.|..:.|..|.:..::..||.
  Rat   106 TG--VHESLTCQVFGYIISVLKSVSMACLACISVDRYLAITKPLSYNQLVTPCRLRICIIMIWIY 168

  Fly   143 AALLCCPPILGYSMP-IENNMTHICMLDWGNMAAYSATLAILVLGPSLISIVHNYGYIFVMMRK- 205
            :.|:..|...|:..| ...::...|...|...|.::..:..|:..|:.:.:...|.:||.:.|: 
  Rat   169 SCLIFLPSFFGWGKPGYHGDIFEWCATSWLTSAYFTCFIVCLLYAPAALVVCFTYFHIFKICRQH 233

  Fly   206 ------IRSGEPIHDKEYATALAENLSNPSHMMSFALVFAFWVSWLPWILLRLYEVVTGDVIQST 264
                  .|:..|.|:.:.:.....:......|:.|.:...|::.|||:|:..|.|  :..|:.:.
  Rat   234 TKEINDRRARFPSHEVDASREAGHSPDRRYAMVLFRITSVFYMLWLPYIIYFLLE--SSRVLDNP 296

  Fly   265 LINFAVVWIGILNSFWKILIMTSMSPQFRIALRVFCLTIC 304
            .::|...|:.|.|||...:|.:..:..||:.||....|:|
  Rat   297 TLSFLTTWLAISNSFCNCVIYSLSNSVFRLGLRRLSQTMC 336

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
DopEcRNP_001014559.1 7tm_classA_rhodopsin-like 18..289 CDD:410626 75/283 (27%)
TM helix 1 18..42 CDD:410626 7/23 (30%)
TM helix 2 51..73 CDD:410626 9/23 (39%)
TM helix 3 89..111 CDD:410626 6/21 (29%)
TM helix 4 134..150 CDD:410626 3/15 (20%)
TM helix 5 174..197 CDD:410626 3/22 (14%)
TM helix 6 230..252 CDD:410626 7/21 (33%)
TM helix 7 264..289 CDD:410626 7/24 (29%)
Gpr52NP_001276864.1 7tm_classA_rhodopsin-like 43..321 CDD:410626 75/283 (27%)
TM helix 1 43..67 CDD:410626 7/25 (28%)
TM helix 2 77..99 CDD:410626 9/21 (43%)
TM helix 3 115..137 CDD:410626 6/21 (29%)
TM helix 4 160..176 CDD:410626 3/15 (20%)
TM helix 5 201..224 CDD:410626 3/22 (14%)
TM helix 6 264..286 CDD:410626 7/21 (33%)
TM helix 7 296..321 CDD:410626 7/24 (29%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1099557at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.010

Return to query results.
Submit another query.