DRSC/TRiP Functional Genomics Resources

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Protein Alignment DopEcR and Oamb

DIOPT Version :9

Sequence 1:NP_001014559.1 Gene:DopEcR / 38539 FlyBaseID:FBgn0035538 Length:322 Species:Drosophila melanogaster
Sequence 2:NP_001262774.1 Gene:Oamb / 43982 FlyBaseID:FBgn0024944 Length:751 Species:Drosophila melanogaster


Alignment Length:160 Identity:49/160 - (30%)
Similarity:88/160 - (55%) Gaps:16/160 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 DNSKVEALTKAV-------LISI-----LGVAIVLSNLLIIATYANFKGPTEVINYYLLSLAIAD 61
            :.::.|.|.|:|       |||:     :.|.::..|.|:||..........|.|:::::||:||
  Fly     2 NETECEDLIKSVKWTEPANLISLAVLEFINVLVIGGNCLVIAAVFCSNKLRSVTNFFIVNLAVAD 66

  Fly    62 LLCGLLVVPFSVYPALTGEWMYGDIVCRFTGYLEVTLW--AVSVYTFMWISVDRYLAVRKPLRYE 124
            ||.||.|:|||....:...|::||:.||.  :|.|.:|  ..|:.....||:|||:||.:|:.|.
  Fly    67 LLVGLAVLPFSATWEVFKVWIFGDLWCRI--WLAVDVWMCTASILNLCAISLDRYVAVTRPVTYP 129

  Fly   125 TVQTKTRCQCWMVFTWISAALLCCPPILGY 154
            ::.:..:.:..:...|:.:..:|.||::|:
  Fly   130 SIMSTKKAKSLIAGIWVLSFFICFPPLVGW 159

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
DopEcRNP_001014559.1 7tm_classA_rhodopsin-like 18..289 CDD:410626 47/151 (31%)
TM helix 1 18..42 CDD:410626 10/35 (29%)
TM helix 2 51..73 CDD:410626 12/21 (57%)
TM helix 3 89..111 CDD:410626 6/23 (26%)
TM helix 4 134..150 CDD:410626 2/15 (13%)
TM helix 5 174..197 CDD:410626
TM helix 6 230..252 CDD:410626
TM helix 7 264..289 CDD:410626
OambNP_001262774.1 7tm_4 29..>154 CDD:304433 39/126 (31%)
7tm_1 37..>181 CDD:278431 41/125 (33%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45460606
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
21.840

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