DRSC/TRiP Functional Genomics Resources

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Protein Alignment DopEcR and Adra1b

DIOPT Version :10

Sequence 1:NP_647897.2 Gene:DopEcR / 38539 FlyBaseID:FBgn0035538 Length:322 Species:Drosophila melanogaster
Sequence 2:NP_058687.2 Gene:Adra1b / 24173 RGDID:2054 Length:515 Species:Rattus norvegicus


Alignment Length:351 Identity:90/351 - (25%)
Similarity:154/351 - (43%) Gaps:66/351 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly    10 NSKVEAL--TKAVLIS-ILGVAI---VLSNLLIIATYA---NFKGPTEVINYYLLSLAIADLLCG 65
            ||.:..|  |:|:.:. :||..|   ::.|:|:|.:.|   :.:.||   ||::::|||||||..
  Rat    34 NSTLPQLDVTRAISVGLVLGAFILFAIVGNILVILSVACNRHLRTPT---NYFIVNLAIADLLLS 95

  Fly    66 LLVVPFSVYPALTGEWMYGDIVCRFTGYLEVTLWAVSVYTFMWISVDRYLAVRKPLRYETVQTKT 130
            ..|:|||....:.|.|:.|.|.|.....::|.....|:.:...||:|||:.||..|:|.|:.|:.
  Rat    96 FTVLPFSATLEVLGYWVLGRIFCDIWAAVDVLCCTASILSLCAISIDRYIGVRYSLQYPTLVTRR 160

  Fly   131 RCQCWMVFTWISAALLCCPPILGYSMPIENNMTHICMLDWGNMAAYSATLAILVLGPSLISIVHN 195
            :....::..|:.:.::...|:||:..|..|:... |.:......|..::|....:..::|.:::.
  Rat   161 KAILALLSVWVLSTVISIGPLLGWKEPAPNDDKE-CGVTEEPFYALFSSLGSFYIPLAVILVMYC 224

  Fly   196 YGYIF-----------VMMRKIRSGE---PIHDKEYATALAENLS-------NPSHMMSFAL--- 236
            ..||.           ||.....|.|   .||.|.:.   .:.||       ||...::..|   
  Rat   225 RVYIVAKRTTKNLEAGVMKEMSNSKELTLRIHSKNFH---EDTLSSTKAKGHNPRSSIAVKLFKF 286

  Fly   237 -------------VFAFWVSWLPWILLRLYEVVTGDVIQSTL-----INFAVVWIGILNSFWKIL 283
                         |..|.:.|||:.:    .:..|.:. |||     :...|.|:|..||....:
  Rat   287 SREKKAAKTLGIVVGMFILCWLPFFI----ALPLGSLF-STLKPPDAVFKVVFWLGYFNSCLNPI 346

  Fly   284 IMTSMSPQFRIALRVFCLTICCKTKG 309
            |....|.:|:   |.|...:.|:.:|
  Rat   347 IYPCSSKEFK---RAFMRILGCQCRG 369

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
DopEcRNP_647897.2 7tm_classA_rhodopsin-like 18..289 CDD:410626 80/319 (25%)
TM helix 1 18..43 CDD:410626 8/31 (26%)
TM helix 2 50..76 CDD:410626 13/25 (52%)
TM helix 3 88..118 CDD:410626 8/29 (28%)
TM helix 4 131..150 CDD:410626 1/18 (6%)
TM helix 5 173..198 CDD:410626 3/24 (13%)
TM helix 6 224..254 CDD:410626 10/52 (19%)
TM helix 7 264..289 CDD:410626 8/29 (28%)
Adra1bNP_058687.2 7tmA_alpha1B_AR 46..359 CDD:320449 82/327 (25%)
TM helix 1 47..73 CDD:320449 7/25 (28%)
TM helix 2 80..106 CDD:320449 14/28 (50%)
TM helix 3 118..148 CDD:320449 8/29 (28%)
TM helix 4 160..183 CDD:320449 2/22 (9%)
TM helix 5 200..229 CDD:320449 4/28 (14%)
TM helix 6 287..317 CDD:320449 5/33 (15%)
TM helix 7 327..352 CDD:320449 6/24 (25%)
Nuclear localization signal. /evidence=ECO:0000250 368..378 1/2 (50%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 392..430
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 474..515
Blue background indicates that the domain is not in the aligned region.

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