DRSC/TRiP Functional Genomics Resources

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Protein Alignment DopEcR and pcdr-1

DIOPT Version :9

Sequence 1:NP_001014559.1 Gene:DopEcR / 38539 FlyBaseID:FBgn0035538 Length:322 Species:Drosophila melanogaster
Sequence 2:NP_510580.1 Gene:pcdr-1 / 181656 WormBaseID:WBGene00010329 Length:318 Species:Caenorhabditis elegans


Alignment Length:309 Identity:105/309 - (33%)
Similarity:176/309 - (56%) Gaps:13/309 - (4%)


- Green bases have known domain annotations that are detailed below.


  Fly    14 EALTKAVLISILGVAIVLSNLLIIATYANFKGPTEVINYYLLSLAIADLLCGLLVVPFSVYPALT 78
            |:|.:|.||..:.:.:.::::|.|...|.....::||..||:||::||||..:.|:|.|:|..|.
 Worm    13 ESLGRASLILAVDLLLFVTSILNITVIAFTPDLSDVIGCYLISLSVADLLTAIFVIPLSIYSTLE 77

  Fly    79 GEWMYG---DIVCRFTGYLEVTLWAVSVYTFMWISVDRYLAVRKPLRYETVQTKTRCQCWMVFTW 140
            |.|..|   .|:|:...||::.|:..:||||.||.:|||.|:.||.|| :.|:.|||:||:||:|
 Worm    78 GNWRIGGDNSIICKSAAYLQIALFCSTVYTFAWICIDRYSAMMKPSRY-SEQSLTRCKCWIVFSW 141

  Fly   141 ISAALLCCPPILGYSMPIENNMTHICMLDWGNMAAYSATLAILVLGPSLISIVHNYGYIFVMMRK 205
            :::.|||||.|:.....:......:|:|||...:|||.||.:||..|:|:::.:....|:..|| 
 Worm   142 LTSMLLCCPIIVARMQVVFYPDAQLCVLDWSATSAYSVTLLLLVFVPTLVTVFNTGWKIWSAMR- 205

  Fly   206 IRSGEPIHDKEYATALAENLSNPSHMMSFALVFAFWVSWLPWILLRLYEVVTGDV-IQSTLINFA 269
                .|....:....|.|  ::|:.:::..|...|::||||.|.|::.|::.|.. :..:::.|.
 Worm   206 ----NPAALDDSQRMLVE--TDPNFVLTGFLFVTFFLSWLPLITLKVCELIWGPFDMDLSMLTFF 264

  Fly   270 VVWIGILNSFWKILIMTSMSPQFRIA-LRVFCLTICCKTKGRLQAELIG 317
            .||:.:.....|.||....:.|||.: |.....::||.::.|.:...||
 Worm   265 FVWLAVSGPCCKFLIYMFTNHQFRRSFLSYISCSMCCSSRSRYEYHDIG 313

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
DopEcRNP_001014559.1 7tm_classA_rhodopsin-like 18..289 CDD:410626 94/274 (34%)
TM helix 1 18..42 CDD:410626 5/23 (22%)
TM helix 2 51..73 CDD:410626 10/21 (48%)
TM helix 3 89..111 CDD:410626 9/21 (43%)
TM helix 4 134..150 CDD:410626 9/15 (60%)
TM helix 5 174..197 CDD:410626 9/22 (41%)
TM helix 6 230..252 CDD:410626 8/21 (38%)
TM helix 7 264..289 CDD:410626 6/24 (25%)
pcdr-1NP_510580.1 7tm_classA_rhodopsin-like 17..284 CDD:381740 94/274 (34%)
TM helix 1 17..41 CDD:381740 5/23 (22%)
TM helix 2 50..72 CDD:381740 10/21 (48%)
TM helix 3 91..113 CDD:381740 9/21 (43%)
TM helix 4 135..151 CDD:381740 9/15 (60%)
TM helix 5 175..198 CDD:381740 9/22 (41%)
TM helix 6 224..246 CDD:381740 8/21 (38%)
TM helix 7 259..284 CDD:381740 6/24 (25%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C160161686
Domainoid 1 1.000 168 1.000 Domainoid score I2321
eggNOG 1 0.900 - - E33208_3BK8J
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 189 1.000 Inparanoid score I2579
Isobase 1 0.950 - 0 Normalized mean entropy S6960
OMA 1 1.010 - - QHG28641
OrthoDB 1 1.010 - - D1099557at2759
OrthoFinder 1 1.000 - - FOG0003993
OrthoInspector 1 1.000 - - oto19961
orthoMCL 1 0.900 - - OOG6_117756
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R17081
SonicParanoid 1 1.000 - - X5013
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1615.650

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