DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment DopEcR and cbwd1.1

DIOPT Version :9

Sequence 1:NP_001014559.1 Gene:DopEcR / 38539 FlyBaseID:FBgn0035538 Length:322 Species:Drosophila melanogaster
Sequence 2:XP_031750968.1 Gene:cbwd1.1 / 100145154 XenbaseID:XB-GENE-5878454 Length:426 Species:Xenopus tropicalis


Alignment Length:325 Identity:86/325 - (26%)
Similarity:134/325 - (41%) Gaps:56/325 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly    18 KAVLISILGVAIVLSN---LLIIATYANFKGPTEVINYYLLSLAIADLLCGLLVVPFSVYPALTG 79
            |..:|:.||..|:|.|   ||:||  ::..|.:....|.|:||...|:...|:|||.::|.:|..
 Frog    51 KIGIITALGCLIILGNSFVLLVIA--SSVSGWSSNSRYILISLTGTDVTLALVVVPLNLYGSLAL 113

  Fly    80 EWMYGD-------IVCRFTGYLEVTLWAVSVYTFMWISVDRYLAVRKPLRYETVQTKTRCQCWMV 137
            |....|       ..|....:|..:::|.|:|:...||::||:||..||.|..|.::.|.:..:.
 Frog   114 EPGEEDDEESPISRYCHIVAFLNSSVFASSIYSLTTISLERYVAVFFPLHYSRVMSRRRVKMLIA 178

  Fly   138 FTWISAALLCCPPILGYSMP-------IENNMTHICMLDWGNMAAYSATLAILVLGP-SLISIVH 194
            ..|:...:..||    .|:|       ..:..:.||..|:.:..|||..|..::..| |.|....
 Frog   179 AAWLLPPIFLCP----ISIPGGRFIRVYFSRASLICNPDYASNVAYSLLLTAVIFFPCSAIVTFA 239

  Fly   195 NYGYIFVMMRKIRS---GEPIHDK-----EYATALAENL-SNPSHMMS----------------- 233
            |.....|..|:.|.   |.....|     .....||.|. |.|:..:|                 
 Frog   240 NLRLWRVARRQSRRMSVGWAAKSKGLCLPTVCGRLAPNRESGPNKGLSRDMGDKGLRKGDAASRV 304

  Fly   234 -FALVFAFWVSWLPWILLRLYEVVTGDVIQSTLINFAVVWI----GILNSFWKILIMTSMSPQFR 293
             ..:|..|:..|.|.::..||..:|.|.:.. .:.|..:|:    |.||.|....|..|...:||
 Frog   305 LVPVVIVFYTCWAPCMITILYNAITQDRVPE-WVEFVALWLPCGNGFLNCFVYFWINKSFRHKFR 368

  Fly   294  293
             Frog   369  368

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
DopEcRNP_001014559.1 7tm_classA_rhodopsin-like 18..289 CDD:410626 84/319 (26%)
TM helix 1 18..42 CDD:410626 11/26 (42%)
TM helix 2 51..73 CDD:410626 9/21 (43%)
TM helix 3 89..111 CDD:410626 5/21 (24%)
TM helix 4 134..150 CDD:410626 2/15 (13%)
TM helix 5 174..197 CDD:410626 8/23 (35%)
TM helix 6 230..252 CDD:410626 5/39 (13%)
TM helix 7 264..289 CDD:410626 8/28 (29%)
cbwd1.1XP_031750968.1 7tm_classA_rhodopsin-like 51..360 CDD:410626 82/315 (26%)
TM helix 1 51..75 CDD:410626 11/25 (44%)
TM helix 2 84..107 CDD:410626 9/22 (41%)
TM helix 3 130..152 CDD:410626 5/21 (24%)
TM helix 4 175..191 CDD:410626 3/19 (16%)
TM helix 5 218..241 CDD:410626 7/22 (32%)
TM helix 6 302..324 CDD:410626 4/21 (19%)
TM helix 7 335..360 CDD:410626 6/25 (24%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1099557at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R17081
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.950

Return to query results.
Submit another query.