DRSC/TRiP Functional Genomics Resources

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Protein Alignment Cip4 and srgap2

DIOPT Version :9

Sequence 1:NP_001097501.1 Gene:Cip4 / 38534 FlyBaseID:FBgn0035533 Length:665 Species:Drosophila melanogaster
Sequence 2:NP_001041700.1 Gene:srgap2 / 556198 ZFINID:ZDB-GENE-060915-2 Length:1100 Species:Danio rerio


Alignment Length:550 Identity:107/550 - (19%)
Similarity:190/550 - (34%) Gaps:143/550 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly    86 IDALDKFANFLRDRVAIETEYAGKLRRLVKNYQPKKK-------EEEDNEFTSVQAFRNLLKEVG 143
            :..|....:|.|.:..||.:|:..|.:|.:.:..|.:       ::|.|..:.|..:..||.:|.
Zfish    43 VQLLQDLQDFFRKKAEIEMDYSRNLEKLAERFLAKTRYTKDPQFKKEQNILSPVNCWNLLLAQVK 107

  Fly   144 DLAGQREVVSESLQLQIIAGVTLLSKTLREERKKCLSDGATLQQNLTTQLSSLDRAKRNYEKAYR 208
            ..:.....:|:.....||.....:|:......||....|..||::|...|:.|....:.|.....
Zfish   108 RESRDHATLSDLYLNNIIPRFAQISEDSGRLFKKSKEVGLQLQEDLMKVLNELYTVMKTYHMYNM 172

  Fly   209 DSEKAVDSYKRADM--DLNLSRA-------------------------------EVERYKNVMTS 240
            ||..|....|.|:.  :..:||:                               ::|:.|....:
Zfish   173 DSINAESKLKEAEKQEEKQMSRSVRHEEKQTPRSPDSLTNIKIEDKHVRRSSVKKIEKMKEKRQA 237

  Fly   241 KIQQSD----DAKNEYANQLQKTNNLQQQHYSMLLPSVLNRLQELDE--------KRTRGFREFI 293
            |..::.    .|:|||...|:.||:...::|       ::.|.:|.:        ...|..|.::
Zfish   238 KYTENKLKAIKARNEYLLALEATNSCVFKYY-------IHDLSDLIDCCDLGYHASLNRALRTYL 295

  Fly   294 VGAADVESSVAPIIARCMEGIVKAGESINEKEDTFKVIERYQSGFTPPRDIPFE----DL--SKC 352
            ....:||:|.    ...:|.|..|.:::....|..:::|.|.:.|.||....|:    |:  ..|
Zfish   296 SAEFNVETSK----HGGLETIENAAKNLEANSDKQRLMETYNNVFCPPMRFDFQSHMGDMVGHLC 356

  Fly   353 DPDSVQ----------DSHYSNSTSNHLTIRGTMSA--NKLKKRVGI--FNIFGSNKNSLTADGQ 403
            ....||          .|..|.....:..::.||.|  ..::..|.|  |::.....:|.:.:..
Zfish   357 AQQPVQGELIQRCQQLQSRLSTLNIENEEVKKTMEATLQTIQDMVTIEDFDVTDCFHHSNSMESV 421

  Fly   404 K----EDFSDLPPNQRRK-------------------------KLQAKIAELTQNIAQETKA--- 436
            |    |.|...|...:|:                         |||||...:.:.:.:..|.   
Zfish   422 KSTVSESFMSKPSLAKRRANQQETEQFYFTKLKEFLEGRNLITKLQAKHDLIQKTLGESQKTDYC 486

  Fly   437 -----RDGLMKMKIVYEANSSLGNPMTVEGQLN-ESEHKLEKLKVDLKKYQGFLEKASQVPTATS 495
                 ||..::.:   ||...:  |:.||..:. .|.|.|.        ::|...        .|
Zfish   487 LASGRRDSTVRKQ---EAIQII--PLMVESCIRFISRHGLH--------HEGIFR--------VS 530

  Fly   496 SPQASRNQLQNG-HRTSRHSNGSADDHHDD 524
            ..|...|.::|. .|......|..:||..|
Zfish   531 GSQVEVNDIKNAFERGEDPLAGDQNDHDMD 560

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Cip4NP_001097501.1 F-BAR_CIP4-like 69..319 CDD:153337 56/284 (20%)
HR1_CIP4-like 412..488 CDD:212009 18/109 (17%)
SH3_CIP4-like 603..661 CDD:212844
srgap2NP_001041700.1 F-BAR_srGAP2 26..288 CDD:153366 48/251 (19%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 181..210 4/28 (14%)
RhoGAP_srGAP 491..675 CDD:239848 19/90 (21%)
SH3_srGAP1-3 742..794 CDD:212888
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 800..835
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 852..938
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 986..1100
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3565
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.810

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