DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Cip4 and srgap1b

DIOPT Version :10

Sequence 1:NP_001097501.1 Gene:Cip4 / 38534 FlyBaseID:FBgn0035533 Length:665 Species:Drosophila melanogaster
Sequence 2:XP_005164640.1 Gene:srgap1b / 555788 ZFINID:ZDB-GENE-041210-103 Length:1071 Species:Danio rerio


Alignment Length:823 Identity:157/823 - (19%)
Similarity:286/823 - (34%) Gaps:252/823 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly    41 SGSSRSSSNNK-LAESENSAQNSNNMSWGTELWDQNENLAIHTNRGIDALDKFANFLRDRVAIET 104
            |.|::|....: :.|.|:..:...     ::|.:|.:.|...|:..:..|....:|.|.:..||:
Zfish     2 SNSTKSKKEKEIITEYESQVKEIR-----SQLVEQQKCLEQQTDMRVQLLQDLQDFFRKKAEIES 61

  Fly   105 EYAGKLRRLVKNYQPKKKEEED--------NEFTSVQAFRNLLKEVGDLAGQREVVSESLQLQII 161
            ||:..|.:|.:.:..|.:..:|        |..:.|..:..||.:|...:.....:|:.....:|
Zfish    62 EYSRNLEKLAERFMAKTRSTKDHQQYKKDQNLLSPVNCWYLLLNQVRRESKDHATLSDLYLNNVI 126

  Fly   162 AGVT--------LLSKT------LREERKKCLSDGATLQQNL----TTQLSS---LDRAKRNYEK 205
            ...|        ||.|:      |:|:..|.|::..|:.:..    |..||:   |..|:|..|:
Zfish   127 TRFTHVSEDNMRLLKKSKEIIFQLQEDLMKILNELYTVMKTYHMYHTETLSAENKLKEAERQGER 191

  Fly   206 AYRDSEKAVDSYKRADMDLNLSRA-EVERYKNVMTSKIQQSD----DAKNEYANQLQKTNNLQQQ 265
            ..|..| ||.|.:..|.....:.| ::::.|....:|..::.    .|:|||...|:.||....:
Zfish   192 QGRGGE-AVFSLRTEDRHQRRNAARKIQKMKEKRQAKYSENKLKVMKARNEYLLTLEATNASLFK 255

  Fly   266 HYSMLLPSVLNRLQELDE--------KRTRGFREFIVGAADVESSVAPIIAR-----CMEGIVKA 317
            :|       ::.|..|.:        ..:|..|.::.....:|:|      |     .:||.|  
Zfish   256 YY-------IHDLSHLTDCCDLGYHAGLSRALRTYLSAEYSLETS------RHEGLDILEGAV-- 305

  Fly   318 GESINEKEDTFKVIERYQSGFTPPRDIPF-----EDLSKCDP-DSVQ----------DSHYSNST 366
             |.::...|..:.:|.:.:.||||....|     :.:|:... ..||          .|..|...
Zfish   306 -EGLDPGNDRQRFMETHPTSFTPPTRFTFQPHMGDQVSQITALPQVQAELLLRFQQLQSRLSTLK 369

  Fly   367 SNHLTIRGTMSA--NKLKKRVGI--FNIFGSNKNSLTADGQKEDFSDL----PPNQRRK------ 417
            ..:..::.|..|  :.::..|.:  :::..|.::|.:.:..|...||.    |...:|:      
Zfish   370 IENEEVKKTSEATLSTIQDMVNMEDYDVSESFQHSRSTESVKSSVSDTYLSKPSLAKRRANQQET 434

  Fly   418 -------------------KLQAKIAELTQNIAQETKA---------------RDGLMKMKIVYE 448
                               |||||...|.::||:..:|               :|....:.::.|
Zfish   435 ELFYFTKLKEYLEGSNLIAKLQAKHDMLKRSIAEGYRADIMTTSRRRNSHSRNQDSGKAIPLIVE 499

  Fly   449 A-----------------------------NS-SLGN-PMTVEGQLNESEHKLEKLKVDLKKY-- 480
            :                             || ..|| |:|.|    |:.|.:..:...||.|  
Zfish   500 SCIRFINLYGLQHQGIFRVSGSQVEVNDIKNSFERGNDPLTDE----ENNHDINSVAGVLKMYFR 560

  Fly   481 ---------------------QGFLEKASQV-PTATSSPQ----------ASRNQLQNGHRTSRH 513
                                 :...|:|..: ...|:.|:          |..|.|      |::
Zfish   561 NLDNPIFPKEKFNDLIACVRTESLYERALSIRKILTTMPRPTLVLMRYLFAFLNHL------SQY 619

  Fly   514 SNGSADDHHDDGDDQPDDAGSL------SRSDSEDNVAQIQ-NGHNNN-------NNGSASPESG 564
            |           |:...|.|:|      :...:.|.:.|:. ..|.|.       ::.:..|::.
Zfish   620 S-----------DENMMDPGNLAICFGPTLMPTPDLLDQVSCQAHVNEIVKTIIIHHETIFPDTK 673

  Fly   565 -----------LGTSHTSLPGSGQGSANENAIGEDTYYETEVETLNPVGKCRALYPFEASSEGSI 618
                       ..|.:...|.|..|:..|......|..:|..|...|| :..|.:.:...|...:
Zfish   674 ELEGPVYEKCMSNTEYCESPYSEPGAFEEGEQDGGTETQTSEEEGEPV-EAIAKFDYVGRSGREL 737

  Fly   619 PMSEGEELQVIEIDQGDGWTRVRRENNSNGWDEGFVPTSYIEI 661
            ...:|..|.:.:....|.|     |...||.| |.:|..|:.:
Zfish   738 TFKKGSTLLLFQRASEDWW-----EGRHNGTD-GLIPHQYVTL 774

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Cip4NP_001097501.1 F-BAR_CIP4-like 69..319 CDD:153337 65/296 (22%)
HR1_CIP4-like 412..488 CDD:212009 25/169 (15%)
SH3_CIP4-like 603..661 CDD:212844 13/57 (23%)
srgap1bXP_005164640.1 BAR 26..277 CDD:472257 57/258 (22%)
RhoGAP_srGAP 480..664 CDD:239848 31/204 (15%)
SH3 722..772 CDD:473055 12/55 (22%)

Return to query results.
Submit another query.