DRSC/TRiP Functional Genomics Resources

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Protein Alignment Cip4 and pacsin3

DIOPT Version :9

Sequence 1:NP_001097501.1 Gene:Cip4 / 38534 FlyBaseID:FBgn0035533 Length:665 Species:Drosophila melanogaster
Sequence 2:XP_009301745.2 Gene:pacsin3 / 393964 ZFINID:ZDB-GENE-040426-984 Length:516 Species:Danio rerio


Alignment Length:666 Identity:112/666 - (16%)
Similarity:193/666 - (28%) Gaps:266/666 - (39%)


- Green bases have known domain annotations that are detailed below.


  Fly    35 CAKLLASGSSRSSSNNKLAESENSAQNSNNMSWGTELWDQNENLAIHTNRGIDALDKFANFL--- 96
            |.|    |..:.|||..|.:..         ||.: .|:.....  .|.:.||...|..|.|   
Zfish    75 CCK----GDPKMSSNGDLQDVG---------SWDS-FWEPGNYK--RTVKRIDDGYKLCNELVSC 123

  Fly    97 -RDRVAIE-------TEYAGKLRRLVKNYQPKKKEEEDNEFTSVQ----AFRNL----------L 139
             ::|..||       :::|.|.|.:|         |:.:::.:::    ||.|.          |
Zfish   124 FQERAKIEKGYSQQLSDWARKWRGIV---------EKGSQYGTLEKAWHAFMNAADRLSEIHMEL 179

  Fly   140 KE---VGDLAGQREVVSESLQLQIIAGVTLLSKTLREERKKCLSDGATLQQNLTTQLSSLDRAKR 201
            ||   :.|....|....::...|:|.|.        .|.|.........|:....:|..::..|:
Zfish   180 KENLVIEDSEKIRNWQKDAFHKQMIGGF--------RETKDADEGFRKAQKPWVRKLKEVESTKK 236

  Fly   202 NYEKAYRDSEKAVDSYKRADMDLNLSRAEVERYKNVMTSKIQQSDDAKNEYANQLQKTNNLQQQH 266
            .|..|.::...|:.....|..|...|:.||.::.:.:....|:::.||..|...|.:.|....: 
Zfish   237 GYHSARKEERTALTRETHAKADPTKSQDEVRKFTDRLEKCTQEAEKAKERYERALDELNRCNPR- 300

  Fly   267 YSMLLPSVLNRLQELDEKRTRGFREFIVGAADVESSVAPIIARCMEGIVKAGESINEKEDTFKVI 331
            |...:..|....||.::.|...|:|.::                                     
Zfish   301 YMEDMEQVFEITQEAEKNRLCFFKEVLL------------------------------------- 328

  Fly   332 ERYQSGFTPPRDIPFEDLSKCDPDSVQDSHYSNSTSNHLTIRGTMSANKLKKRVGIFNIFGSNKN 396
                                       |.|      .|:                          
Zfish   329 ---------------------------DIH------QHM-------------------------- 334

  Fly   397 SLTADGQKEDFSDLPPNQRRKKLQAKIAELTQNIAQETKARDGLMKMKIVYEANSSLGNPMTVEG 461
                        ||..|.|   .:|...:|.|.|:......| |...:..:....|:..|...|.
Zfish   335 ------------DLSSNDR---FRALYRDLGQTISAANDTED-LRWWRNTHGPGMSMNWPQFEEW 383

  Fly   462 QLNESEHKLEKLKVDLKKYQGFLEKASQVPTATSSPQASRNQLQNGHRTSRHSNGSADDHHDD-- 524
                                              ||:|:|: :....|.||         .||  
Zfish   384 ----------------------------------SPEANRS-ISRKDRNSR---------SDDVV 404

  Fly   525 --------GDDQPDDAGSLSRSDSEDNVAQIQNGHNNNNNGSASPESGLGTSHTSLPGSGQGSAN 581
                    ||:.|......:|:..:         ::::.:...||:..:..              
Zfish   405 TLTNIVSAGDEPPQTLQETTRAGKD---------YSSDWSDEESPKKYIAA-------------- 446

  Fly   582 ENAIGEDTYYETEVETLNPVG-KCRALYPFEASSEGSIPMSEGEELQVIEIDQGDGWTRVRRENN 645
             |.:.|    |.:|     || :.||||.:.......:....||||..:..:...||.:    ..
Zfish   447 -NGVDE----EEKV-----VGVRVRALYDYTGQEADELSFKAGEELLKLGEEDEQGWCK----GQ 497

  Fly   646 SNGWDEGFVPTSYIEI 661
            ....::|..|.:|::|
Zfish   498 LTSGEKGLYPANYVQI 513

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Cip4NP_001097501.1 F-BAR_CIP4-like 69..319 CDD:153337 52/277 (19%)
HR1_CIP4-like 412..488 CDD:212009 11/75 (15%)
SH3_CIP4-like 603..661 CDD:212844 13/57 (23%)
pacsin3XP_009301745.2 None


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R2056
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.940

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