DRSC/TRiP Functional Genomics Resources

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Protein Alignment Cip4 and Fchsd1

DIOPT Version :9

Sequence 1:NP_001097501.1 Gene:Cip4 / 38534 FlyBaseID:FBgn0035533 Length:665 Species:Drosophila melanogaster
Sequence 2:XP_006526066.1 Gene:Fchsd1 / 319262 MGIID:2441771 Length:690 Species:Mus musculus


Alignment Length:614 Identity:128/614 - (20%)
Similarity:223/614 - (36%) Gaps:136/614 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly    73 DQNENLAIHTNRGIDALDKFANFLRDRVAIETEYAGKLRRL----VKNYQPKKKEEEDNEFTSVQ 133
            :|...|.....|..|.|:...::.:.|.|||.||...|::|    :|....:..|.:....|...
Mouse    20 EQLSILQTRQQREADLLEDIRSYSKQRAAIEREYGQALQKLAGPFLKREGQRSGEADSRGRTVFG 84

  Fly   134 AFRNLLKEVGDLAGQREVVSESLQLQIIAGVTLLSKTLREERKKCLSDGA-TLQQNLTTQLSS-- 195
            |:|.||.  ..:||.:..:..|.:.:.:||     .|.|..:::.|..|. :|||.....|.|  
Mouse    85 AWRCLLD--ATVAGGQTRLQASDRYRDLAG-----GTGRSAKEQVLRKGTESLQQAQAEVLQSVR 142

  Fly   196 -LDRAKRNYEKAYR----DSEKAVD---SYKRADMDLNLSRAEVERYKNVMTSK----IQQSDDA 248
             |.|:::.|.:..|    ..|||.|   ...|:|..:..||..:::....::::    .||...|
Mouse   143 ELSRSRKLYGQRQRVWALAQEKAADVQARLNRSDHGIFHSRTSLQKLSTKLSAQSAQYSQQLRAA 207

  Fly   249 KNEYANQLQKTNNLQQQHYSMLLPSVLNRL-QELDEKRTRGFREFIVGAADVESSVAPIIARCME 312
            :|||...|..||.....:|...||::|..| .||.|.    .|:.:......|...|.:|.....
Mouse   208 RNEYLLNLVATNAHLAHYYQEELPALLKVLVSELSEY----LRDPLTLLGHTELEAAEMILEHAR 268

  Fly   313 GIVKAGESINEKEDTFKVIERYQSGFTPPRDIPFEDLSKCDPDSVQDSHYSNSTSNHLTIRGTMS 377
            ...||...:|.::|. |:..:....|:|   .|.:.......|.|....:...        |...
Mouse   269 HGGKATSQVNWEQDV-KLFLQGPGVFSP---TPPQQFQPAGADQVCGLEWGAG--------GMAG 321

  Fly   378 ANKLKKRVGIFNIFGSNKNSLTADGQK-----EDFSDLPPNQRRKKLQAKIAELTQNI--AQETK 435
            .:.|:|.|..:....:....:...|.:     |......|.:....::.::.|:.:||  ||.::
Mouse   322 ESGLEKEVQRWTSRAARDYKIQHHGHRVLQRLEQRRQQAPGREAPGVEQRLQEVRENIRRAQVSQ 386

  Fly   436 ARDGLMKMKIVYEANSSLGNPMTVEGQLNESEHKLEKLKVDLKKYQGFLEKASQVPTATSSPQAS 500
            .: |..::.::.||.                        :|::::   |:.|.   |........
Mouse   387 VK-GAARLALLQEAG------------------------LDVQRW---LKPAM---TQAQDEVEQ 420

  Fly   501 RNQLQNGHRTSRHSNGSADDHHDDGDDQPDDAGSLSRSDSEDNVAQIQNGHNNNNNGSASPESGL 565
            ..:|.....:.|..:.:|:|......|:.::||.|...                   .|.|  .|
Mouse   421 ERRLSEARLSQRDLSPTAEDAELSDFDECEEAGELFEE-------------------PAPP--AL 464

  Fly   566 GTSHTSLPGSGQGSANENAIGEDTYYETEVETLNPVGKCRALYPFEASSEGSIPMSEGEELQVIE 630
            .|.....|                              ...::.::|..|..:.::|||.|:|||
Mouse   465 ATRPLPCP------------------------------AHVVFGYQAGREDELTITEGEWLEVIE 499

  Fly   631 IDQGDGWTRVRRENNSNGWDEGFVPTSYI 659
            ....|.|.:.|   |.:| :.||||..|:
Mouse   500 EGDADEWVKAR---NQHG-EAGFVPERYL 524

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Cip4NP_001097501.1 F-BAR_CIP4-like 69..319 CDD:153337 69/265 (26%)
HR1_CIP4-like 412..488 CDD:212009 11/77 (14%)
SH3_CIP4-like 603..661 CDD:212844 19/57 (33%)
Fchsd1XP_006526066.1 BAR 16..275 CDD:386243 69/265 (26%)
SH3_FCHSD_1 470..526 CDD:212695 20/89 (22%)
SH3 550..607 CDD:388381
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3565
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D348563at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.820

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