DRSC/TRiP Functional Genomics Resources

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Protein Alignment Cip4 and Fchsd2

DIOPT Version :9

Sequence 1:NP_001097501.1 Gene:Cip4 / 38534 FlyBaseID:FBgn0035533 Length:665 Species:Drosophila melanogaster
Sequence 2:XP_008757943.2 Gene:Fchsd2 / 308864 RGDID:1304812 Length:764 Species:Rattus norvegicus


Alignment Length:616 Identity:121/616 - (19%)
Similarity:244/616 - (39%) Gaps:141/616 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly    87 DALDKFANFLRDRVAIETEYAGKLRRLVKNY----QPKKKEEEDNEFTSV-QAFRNLLKEVGDLA 146
            |.|:....|.:.:.|||.|||..:::|...|    .|..|.::.|::.|: ..:::.|:....:|
  Rat    34 DLLEDMRTFSQKKAAIEREYAQGIQKLASQYLKRDWPGIKTDDRNDYRSMYPVWKSFLEATMQVA 98

  Fly   147 GQREVVSESLQLQIIAGVTLLSKTLREER-KKCLSDGATLQQNLTTQLSSLDRAKRNY----EKA 206
            ..|..:.|:.: ..|:......::|:|:: |:|:.....:|..|...:..|.:.|:.|    :.|
  Rat    99 QSRINICENYK-NFISEPARAVRSLKEQQLKRCVDQLTKIQTELQETVKDLVKGKKKYFETEQMA 162

  Fly   207 YRDSEKAVDSYKRADMDLNLSRAEVE----RYKNVMTSKIQQSDDAKNEYANQLQKTNNLQQQHY 267
            :...||| |...::.:.|..||..::    :.|...|....::..|:|:|...|...|..|.::|
  Rat   163 HAVREKA-DIEAKSKLSLFQSRISLQKASVKLKARRTECNTKATHARNDYLLTLAAANAHQDRYY 226

  Fly   268 SMLLPSVLNRLQELDEKRTRGFREFIVGAADVESSVAPIIARCMEGIVKAGESINEKEDTFKVIE 332
            .   ..:||.::.||.......:::::..:..|......:....:.::         |::.||:.
  Rat   227 Q---TDLLNIMKALDGNVYDHLKDYLIAFSRTELEACQAMQNTFQFLL---------ENSSKVVR 279

  Fly   333 RY--------QSGFTPPRDIPFEDLSKCDPDS------VQDSHYSNSTSNHLTIRGTMSANKLKK 383
            .|        .:.|..|:...|:   .||.|:      :.|...|..::..:||   ..:.:|:.
  Rat   280 DYNLQLFLQENAVFHKPQPFQFQ---PCDSDTSLKAAQLVDIELSPVSALRMTI---AESRQLES 338

  Fly   384 RVGIFNIFGSNKNSLTADGQKEDFSDLPPNQRRKKLQAKIAELTQNIAQETKARDGLMKMKIVYE 448
            ..|.     :.::||              |:..:|...::|...:||..:.:..:.|....:...
  Rat   339 ETGT-----TEEHSL--------------NKEARKWATRVAREHKNIVHQQRVLNELECHGVAVS 384

  Fly   449 ANSSLGNPMTVEGQLNESEHKLEKLKVDLKKYQGFLEKASQVPTATSS-PQASRNQ----LQNGH 508
            ..|.    ..:|.:::|:...:.|.::...|.:..|:...|:..:..: .:::.||    |:| .
  Rat   385 EQSR----AELEQKIDEARENIRKAEIIKLKAEARLDLLKQIGVSVDTWLKSAMNQVMEELEN-E 444

  Fly   509 RTSR----HSNG-----SADDHHDDGDDQPDDAGSLSRSDSEDNVAQIQNGHNNNNNGSASPESG 564
            |.:|    .|||     :||...::|:            :.|||:...       ::.|:||...
  Rat   445 RWARPPAVTSNGTLHSLNADAEREEGE------------EFEDNMDVF-------DDSSSSPSGT 490

  Fly   565 LGTSHTSLPGSGQGSANENAIGEDTYYETEVETLNPVGKCRALYPFEASSEGSIPMSEGEELQVI 629
            |                      ..|..|          |:.:|.::||....:.:.|.|.|:||
  Rat   491 L----------------------RNYPLT----------CKVVYSYKASQPDELTIEEHEVLEVI 523

  Fly   630 EIDQGDGWTRVRRENNSNGWDEGFVPTSYIE 660
            |....:.|.:.|   |..| ..|:||..|::
  Rat   524 EDGDMEDWVKAR---NKVG-QVGYVPEKYLQ 550

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Cip4NP_001097501.1 F-BAR_CIP4-like 69..319 CDD:153337 51/245 (21%)
HR1_CIP4-like 412..488 CDD:212009 12/75 (16%)
SH3_CIP4-like 603..661 CDD:212844 18/58 (31%)
Fchsd2XP_008757943.2 F-BAR_FCHSD2 16..275 CDD:153361 52/254 (20%)
SH3_FCHSD_1 495..551 CDD:212695 19/70 (27%)
SH3_FCHSD2_2 595..650 CDD:212827
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3565
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D348563at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.820

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