DRSC/TRiP Functional Genomics Resources

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Protein Alignment Cip4 and itsn-1

DIOPT Version :9

Sequence 1:NP_001097501.1 Gene:Cip4 / 38534 FlyBaseID:FBgn0035533 Length:665 Species:Drosophila melanogaster
Sequence 2:NP_001299978.1 Gene:itsn-1 / 178491 WormBaseID:WBGene00006405 Length:1087 Species:Caenorhabditis elegans


Alignment Length:557 Identity:114/557 - (20%)
Similarity:197/557 - (35%) Gaps:131/557 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly   115 KNYQPKKKEEEDNEFTSVQAFRNLLKEVGDLAGQREVVSESLQLQIIAGVTLLSKTLREERKKCL 179
            |:..||..|::..:        ||.|...:|..:|.|:.|..|.:   ...:..|...||.||..
 Worm   284 KSPAPKTFEDKRQD--------NLSKGQAELERRRRVLEEEEQRR---RAEVEKKEREEEAKKNR 337

  Fly   180 SDGATLQQNLTTQLSSLDR-----AKRNYEKAYRDSEKAVDSYKRADMDLNLSRAEVERYKNVMT 239
            ......:|....:.:.|:|     |:|..|    :.::.::..:|.:.|..:.:.::|:.|   .
 Worm   338 ERQEKERQAEVERQAELERQRIIEAQREEE----EKKRRLEMERRREEDEKMRKVQMEKAK---V 395

  Fly   240 SKIQQSDDAKNE-YANQLQKTNNLQQQHYSMLLPSVLNRLQELDEKRTRGFREFIVGAADVESSV 303
            .::|.....:|| .|.:.|:...||.|            ||.||||           ..|||..:
 Worm   396 KQMQNQKQQENERLAQRQQREKTLQFQ------------LQALDEK-----------VIDVEVDI 437

  Fly   304 APIIARCMEGIVKAGESINEKEDTFKVIERYQSGFTPPRDIPFEDLSKCDPDSVQDSHYSNSTSN 368
            .           ||.|::.|   ....|||.:|    .||   |.:::.  ..:|:::....|: 
 Worm   438 G-----------KAKEAVAE---VTGFIERMRS----TRD---EKVARI--KELQETNQKFQTA- 478

  Fly   369 HLTIRGTMSANKLKKRVGIFNIFGSNKNSLTADGQKEDFSDLPPNQRRKKLQAKIAELTQNIAQE 433
               |......::|.::..........|:.|.|..:|.|       ..||.::....||:....:.
 Worm   479 ---IESQELGHQLLQKQSAHKETTQRKSELEALRRKRD-------AIRKAIEDAALELSTEKEKS 533

  Fly   434 TKARDGLMKMKIVYEANSSLGNPMTVEGQLNESE---HKLEKLKVDLKKYQGFLEKASQVPTATS 495
            ....:.|...|..|:.:.........|...|..|   |.....:..:.:::.....||..|....
 Worm   534 YNQTEILKTNKEKYKTDVYSKLVAKREEYRNSFELLVHAQTHARSKIGEFEAKSAPASAAPAPAP 598

  Fly   496 SPQASRNQLQNGHRTSRHSNGSADDHHDDGDDQPDDAGSLSRSDSEDNVAQIQNGHNNNNNGSAS 560
            :|..:..   ||...:.:......|..|.......|.|:.|.:|....:||              
 Worm   599 APAPTTT---NGFPANFNDAFGEFDKTDASQRFDADFGATSTADPFAQIAQ-------------- 646

  Fly   561 PESGLGTSHTSLPGSGQGSANENAIG-EDTYYETEVETLNPVGKCRALYPFEASSEGSIPMSEGE 624
                       .|...:|:.:::|.. .|||            |||||:.|||.||..:....|:
 Worm   647 -----------APAHSKGAVDQSAFNIHDTY------------KCRALFAFEARSEDELSFEPGD 688

  Fly   625 ELQVIEIDQGD-GWTRVRRENNSNGWDEGFVPTSYIE 660
            .:.|.:....: || |..:.....||    .|.:::|
 Worm   689 VIIVFQSHAAEPGW-RAGQLREKVGW----FPEAFVE 720

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Cip4NP_001097501.1 F-BAR_CIP4-like 69..319 CDD:153337 46/209 (22%)
HR1_CIP4-like 412..488 CDD:212009 11/78 (14%)
SH3_CIP4-like 603..661 CDD:212844 19/59 (32%)
itsn-1NP_001299978.1 EH 4..93 CDD:197477
EH 12..80 CDD:238009
EH 169..259 CDD:197477
EH 180..246 CDD:238009
DUF4515 387..578 CDD:291649 50/250 (20%)
LCD1 390..>429 CDD:286837 14/53 (26%)
ATP-synt_B <423..544 CDD:304375 34/165 (21%)
SH3_Intersectin_1 667..721 CDD:212770 19/59 (32%)
SH3_Intersectin_2 786..838 CDD:212771
SH3 889..938 CDD:214620
SH3_Intersectin_4 965..1021 CDD:212773
SH3 1028..1085 CDD:214620
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R2056
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.030

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