DRSC/TRiP Functional Genomics Resources

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Protein Alignment PMP34 and AT3G51870

DIOPT Version :10

Sequence 1:NP_728982.1 Gene:PMP34 / 38532 FlyBaseID:FBgn0052250 Length:314 Species:Drosophila melanogaster
Sequence 2:NP_190755.2 Gene:AT3G51870 / 824350 AraportID:AT3G51870 Length:381 Species:Arabidopsis thaliana


Alignment Length:216 Identity:62/216 - (28%)
Similarity:101/216 - (46%) Gaps:32/216 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 VAPSKLSQVLSYQNFVHAVSG-----------AAGGCIAMST---FYPLDTVRSRLQLEEAGDVR 52
            |.|....|:|:|:::.:...|           |||.|..|::   .||||.:|.||.:|..  .|
plant   160 VLPYSAVQLLAYESYKNLFKGKDDQLSVIGRLAAGACAGMTSTLLTYPLDVLRLRLAVEPG--YR 222

  Fly    53 STRQVIKEIVLGEGFQSLYRGLGPVLQSLCISNFVYFYTFHALKAVASGGSPSQH--SALKDLLL 115
            :..||...::..||..|.|.||||.|..:.....|.|..|..:|.    ..|.::  .|...||.
plant   223 TMSQVALSMLRDEGIASFYYGLGPSLVGIAPYIAVNFCIFDLVKK----SLPEEYRKKAQSSLLT 283

  Fly   116 GSIAGIINVLTTTPFWVVNTRLRMRNVAGTSDEVNKHYKNLLEGLKYVAEKEGIAGLWSGTIP-S 179
            ..::..|..||..|...|..:::||   ||.      ||::.|....:.:::|:.||:.|.:| :
plant   284 AVLSAGIATLTCYPLDTVRRQMQMR---GTP------YKSIPEAFAGIIDRDGLIGLYRGFLPNA 339

  Fly   180 LMLVSNPALQFMMYEMLKRNI 200
            |..:.|.:::...::|:||.|
plant   340 LKTLPNSSIRLTTFDMVKRLI 360

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PMP34NP_728982.1 Mito_carr 15..96 CDD:395101 29/94 (31%)
Mito_carr 105..202 CDD:395101 26/99 (26%)
Mito_carr 214..303 CDD:395101
AT3G51870NP_190755.2 PTZ00169 102..360 CDD:240302 61/214 (29%)
Blue background indicates that the domain is not in the aligned region.

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