DRSC/TRiP Functional Genomics Resources

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Protein Alignment PMP34 and slc25a40

DIOPT Version :10

Sequence 1:NP_728982.1 Gene:PMP34 / 38532 FlyBaseID:FBgn0052250 Length:314 Species:Drosophila melanogaster
Sequence 2:NP_989316.1 Gene:slc25a40 / 394941 XenbaseID:XB-GENE-1003942 Length:341 Species:Xenopus tropicalis


Alignment Length:337 Identity:77/337 - (22%)
Similarity:145/337 - (43%) Gaps:64/337 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 VAPSKLSQVLSYQNFVHAVSGAAGGCIAMSTFY--PLDTVRSRLQLEE----------------- 47
            :.||        |..:.:..||     .:::|:  |||.|:.|||.:.                 
 Frog    14 ITPS--------QQMIASSMGA-----LLTSFFVTPLDVVKIRLQAQSKPFIKGKCFVYCNGLMD 65

  Fly    48 ----------------AGDVRSTRQVIKEIVLGEGFQSLYRGLGPVLQSLCISNFVYFYTFHALK 96
                            .|..|.|.....:|:..||.:||:.||.|.|.....:..:||..:..|:
 Frog    66 HLCLCTNGNGKAWYRAPGHFRGTTDAFVQIIRNEGIKSLWSGLPPTLVMAVPATVIYFTCYDQLR 130

  Fly    97 AVASGGSPSQHSALKDLLLGSIAGIINVLTTTPFWVVNTRLRMRNVAGTSDEVNKHYKNLLEGLK 161
            .:.....| :.:.:..|:.|:.|.:.:....:|..::.|:::.|.::         ||.|.:.::
 Frog   131 DILIRSMP-ERAEIASLVAGATARLWSATLISPLELIRTKMQYRPLS---------YKELRQCIQ 185

  Fly   162 YVAEKEGIAGLWSGTIPSLML-VSNPALQFMMYEMLKRNI-MRFTGGEMGSLSFFFIGAIAKAFA 224
            ....|:|...||.|..|:::. |...||.:..||::|::: .|:...:......|..||::.:.|
 Frog   186 SSVAKDGWLALWKGWGPTVLRDVPFSALYWHNYELVKQSLCQRYNTLQPTFAISFTAGAVSGSIA 250

  Fly   225 TVLTYPLQLVQTKQRHRSKESDSKPSTSAGSTPRTESTLELMISILQHQGIRGLFRGLEAKILQT 289
            .::|.|..:|:|:::....|.:    ....|..|:.||.:||.:|:...|..|||.||..::::.
 Frog   251 AIVTLPFDVVKTRRQVEVGELE----MFTYSQKRSSSTWKLMRAIVIENGFGGLFAGLIPRLIKV 311

  Fly   290 VLTAALMFMAYE 301
            ....|:|...||
 Frog   312 APACAIMISTYE 323

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PMP34NP_728982.1 Mito_carr 15..96 CDD:395101 24/115 (21%)
Mito_carr 105..202 CDD:395101 21/98 (21%)
Mito_carr 214..303 CDD:395101 26/88 (30%)
slc25a40NP_989316.1 Mito_carr 14..136 CDD:395101 28/134 (21%)
Solcar 1 14..132 28/130 (22%)
Solcar 2 140..224 21/92 (23%)
Mito_carr 143..225 CDD:395101 21/90 (23%)
Mito_carr 233..331 CDD:395101 26/95 (27%)
Solcar 3 234..328 26/94 (28%)

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