Protein Alignment PMP34 and Shawn

DIOPT Version :10

• Sequence 1: NP_728982.1
• Gene: PMP34 / 38532
• FlyBaseID: FBgn0052250
• Length: 314
• Species: Drosophila melanogaster
• Sequence 2: NP_001027071.1
• Gene: Shawn / 3772641
• FlyBaseID: FBgn0031039
• Length: 387
• Species: Drosophila melanogaster
• Alignment Length: 337
• Identity: 76/337 - (22%)
• Similarity: 131/337 - (38%)
• Gaps: 73/337 - (21%)

  Fly    20 VSGAAGGCIAMSTFY-PLDTVRSRLQLEE----------------------------------AG 49
            |:.|..|.:..:.|. |||.:::|||.::                                  |.
  Fly    43 VASACTGAMVTACFMTPLDVIKTRLQAQQQALLSNKCFLYCNGLMDHICPCGPDTPNPAAAKPAP 107

  Fly    50 DVRSTRQVIKEIVLGEGFQSLYRGLGPVLQSLCISNFVYFYTFHALKA--------------VAS 100
            ....|.....:|...||..||:.||.|.|.|...|..:||..:...||              ..:
  Fly   108 RFSGTIDAFIKISRTEGIGSLWSGLSPTLISALPSTIIYFVAYEQFKARFTDIHYKYTRRPDTIA 172

  Fly   101 GGSPSQHSALKDLLLGSIAGIINVLTTTPFWVVNTRLRMRNVAGTSDEVNKHYKNLLEGLKYVAE 165
            ...|.....|..||.|....|:.|...:|..::.|:::.:.:.         :..:...::.|.:
  Fly   173 HDIPHPIPFLVPLLAGVSGRILAVTCVSPVELIRTKMQSQRMT---------HAEMFGTIRQVVQ 228

  Fly   166 KEGIAGLWSGTIPSLML-VSNPALQFMMYEMLKRNIMRFTGGEMGSLSF-FFIGAIAKAFATVLT 228
            .:|:.|||.|..|:::. |....:.:..||.||.:.    |....:.|| |..|||:.:.|..:|
  Fly   229 SQGVLGLWRGLPPTILRDVPFSGIYWTCYEYLKSSF----GVVEPTFSFSFAAGAISGSVAATIT 289

  Fly   229 YPLQLVQTKQRHRSKE----SDSKPSTSAGSTPRTESTLELMISILQHQGIRGLFRGLEAKILQT 289
            .|..:|:|.::....|    ||:.|...|     |:|....:.||.:..|:..:|.||..::.:.
  Fly   290 TPFDVVKTHEQIEFGEKFIFSDNPPKQVA-----TKSVAMRLASIYRMGGVPAIFSGLGPRLFKV 349

  Fly   290 VLTAALMFMAYE 301
            ....|:|..::|
  Fly   350 APACAIMISSFE 361

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
PMP34	NP_728982.1	Mito_carr	15..96	CDD:395101	25/110 (23%)
		Mito_carr	105..202	CDD:395101	20/97 (21%)
		Mito_carr	214..303	CDD:395101	25/92 (27%)
Shawn	NP_001027071.1	Mito_carr	39..159	CDD:395101	27/115 (23%)
		Mito_carr	178..265	CDD:395101	20/99 (20%)
		Mito_carr	268..371	CDD:395101	27/99 (27%)