DRSC/TRiP Functional Genomics Resources

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Protein Alignment PMP34 and Allc

DIOPT Version :10

Sequence 1:NP_728982.1 Gene:PMP34 / 38532 FlyBaseID:FBgn0052250 Length:314 Species:Drosophila melanogaster
Sequence 2:NP_001013055.1 Gene:Allc / 246758 RGDID:621804 Length:413 Species:Rattus norvegicus


Alignment Length:97 Identity:17/97 - (17%)
Similarity:30/97 - (30%) Gaps:39/97 - (40%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 KLSQVLSYQNFVHAVSGAAGGCIAMST---FYPLDTVRSRLQLEEAGDVRSTRQVIKE------- 60
            ||::.|.:...:...|...||.:..:|   |.|.:.:           ::|.....||       
  Rat     9 KLTRFLDFTQLIDLASECVGGKVLFATDDFFGPAENL-----------IKSNNPSFKENEYTEFG 62

  Fly    61 ------------------IVLGEGFQSLYRGL 74
                              .|:..|.|.:.||:
  Rat    63 KWVDGWETRRKRIPGHDWCVIQLGIQGIIRGI 94

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PMP34NP_728982.1 Mito_carr 15..96 CDD:395101 14/88 (16%)
Mito_carr 105..202 CDD:395101
Mito_carr 214..303 CDD:395101
AllcNP_001013055.1 allantoicase 18..385 CDD:274363 14/88 (16%)
Blue background indicates that the domain is not in the aligned region.

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