DRSC/TRiP Functional Genomics Resources

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Protein Alignment PMP34 and Slc25a17

DIOPT Version :9

Sequence 1:NP_001246615.1 Gene:PMP34 / 38532 FlyBaseID:FBgn0052250 Length:314 Species:Drosophila melanogaster
Sequence 2:NP_035529.1 Gene:Slc25a17 / 20524 MGIID:1342248 Length:307 Species:Mus musculus


Alignment Length:306 Identity:149/306 - (48%)
Similarity:201/306 - (65%) Gaps:24/306 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 LSQVLSYQNFVHAVSGAAGGCIAMSTFYPLDTVRSRLQLEEAGDVRSTRQVIKEIVLGEGFQSLY 71
            ::.||||::.||||:||.|...||:.|:||||.|.|||::|....::|..|:.||:..||..:.|
Mouse     1 MASVLSYESLVHAVAGAVGSVTAMTVFFPLDTARLRLQVDEKRKSKTTHAVLLEIIKEEGLLAPY 65

  Fly    72 RGLGPVLQSLCISNFVYFYTFHALKAVASGGSPSQHSALKDLLLGSIAGIINVLTTTPFWVVNTR 136
            ||..||:.|||.|||||||||::||||...|..|  |..|||::|.:||::|||.|||.||||||
Mouse    66 RGWFPVISSLCCSNFVYFYTFNSLKAVWVKGQRS--STGKDLVVGFVAGVVNVLLTTPLWVVNTR 128

  Fly   137 LRMRNVA-GTSDEVNKHYKNLLEGLKYVAEKEGIAGLWSGTIPSLMLVSNPALQFMMYEMLKRNI 200
            |:::... ...|.:..:||.:::....:...|||..||:||.|||:||.|||:|||.||.|||.:
Mouse   129 LKLQGAKFRNEDIIPTNYKGIIDAFHQIIRDEGILALWNGTFPSLLLVFNPAIQFMFYEGLKRQL 193

  Fly   201 MRFTGGEMGSLSFFFIGAIAKAFATVLTYPLQLVQT---KQRHRSKESDSKPSTSAGSTPRTEST 262
            :: ...::.||..|.|||||||.||.:|||:|.||:   ..|||....:           ||..:
Mouse   194 LK-KRMKLSSLDVFIIGAIAKAIATTVTYPMQTVQSILRFGRHRLNPEN-----------RTLGS 246

  Fly   263 LELMISILQHQ-----GIRGLFRGLEAKILQTVLTAALMFMAYEKI 303
            |..::|:| ||     ||.||::|||||:|||||||||||:.|||:
Mouse   247 LRNVLSLL-HQRVKRFGIMGLYKGLEAKLLQTVLTAALMFLVYEKL 291

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PMP34NP_001246615.1 Mito_carr 15..96 CDD:278578 42/80 (53%)
Mito_carr 105..202 CDD:278578 47/97 (48%)
Mito_carr 214..303 CDD:278578 48/96 (50%)
Slc25a17NP_035529.1 Necessary for targeting to peroxisomes and interaction with PEX19. /evidence=ECO:0000250 1..147 73/147 (50%)
Mito_carr 10..95 CDD:365909 46/84 (55%)
Solcar 2 99..192 46/94 (49%)
Mito_carr 100..195 CDD:365909 46/94 (49%)
Peroxisome localization signal. /evidence=ECO:0000250 190..199 2/9 (22%)
Solcar 3 200..294 51/104 (49%)
Mito_carr 217..291 CDD:365909 39/85 (46%)
Necessary for targeting to peroxisomes and interaction with PEX19. /evidence=ECO:0000250 244..307 28/49 (57%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 99 1.000 Domainoid score I7126
eggNOG 1 0.900 - - E1_COG4266
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H4637
Inparanoid 1 1.050 264 1.000 Inparanoid score I3067
Isobase 1 0.950 - 0 Normalized mean entropy S2275
OMA 1 1.010 - - QHG53601
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0007252
OrthoInspector 1 1.000 - - oto95030
orthoMCL 1 0.900 - - OOG6_103707
Panther 1 1.100 - - LDO PTHR45939
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R5749
SonicParanoid 1 1.000 - - X6128
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
1514.810

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