DRSC/TRiP Functional Genomics Resources

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Protein Alignment PMP34 and F55A11.4

DIOPT Version :10

Sequence 1:NP_728982.1 Gene:PMP34 / 38532 FlyBaseID:FBgn0052250 Length:314 Species:Drosophila melanogaster
Sequence 2:NP_001256365.1 Gene:F55A11.4 / 186276 WormBaseID:WBGene00010077 Length:535 Species:Caenorhabditis elegans


Alignment Length:299 Identity:75/299 - (25%)
Similarity:134/299 - (44%) Gaps:24/299 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly    18 HAVSGAAGGCIAMSTFYPLDTVRSRLQLEEAGDVR-STRQVIKEIVLGEGFQSLYRGLGPVLQSL 81
            |.|:|.|.|.::.:...|.|.::..||:..:...| .....:|.:....|.:|.:||.|..:..:
 Worm   251 HLVAGGAAGAVSRTCTAPFDRIKVYLQVNSSKTNRLGVMSCLKLLHAEGGIKSFWRGNGINVIKI 315

  Fly    82 CISNFVYFYTFHALKAVASGGSPSQH-SALKDLLLGSIAGIINVLTTTPFWVVNTRLRMRNVAGT 145
            ...:.:.|..:..||.:......::. |..:.|..||.||.|:..|..|..|:.|||.:|. .|.
 Worm   316 APESAIKFMCYDQLKRLIQKKKGNEEISTFERLCAGSAAGAISQSTIYPMEVMKTRLALRK-TGQ 379

  Fly   146 SDEVNKHYKNLLEGLKYVAEKEGIAGLWSGTIPSLM-LVSNPALQFMMYEMLKRNIMRF---TGG 206
            .|....|:.:.:    |.  ||||...:.|.:|:|: ::....:...:||.|||..:|:   ...
 Worm   380 LDRGIIHFAHKM----YT--KEGIRCFYKGYLPNLIGIIPYAGIDLAIYETLKRTYVRYYETNSS 438

  Fly   207 EMGSLSFFFIGAIAKAFATVLTYPLQLVQTKQRHRS-KESDSKPSTSAGSTPRTESTLELMISIL 270
            |.|.|:....|..:.....:.:||..||:|:.:..| .....:|.|..|.          ...||
 Worm   439 EPGVLALLACGTCSSTCGQLSSYPFALVRTRLQALSITRYSPQPDTMFGQ----------FKYIL 493

  Fly   271 QHQGIRGLFRGLEAKILQTVLTAALMFMAYEKIAGTVGM 309
            |::|:.|.:||:....|:.:...::.::.|||:...:|:
 Worm   494 QNEGVTGFYRGITPNFLKVIPAVSISYVVYEKVRTGLGV 532

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PMP34NP_728982.1 Mito_carr 15..96 CDD:395101 17/78 (22%)
Mito_carr 105..202 CDD:395101 30/98 (31%)
Mito_carr 214..303 CDD:395101 20/89 (22%)
F55A11.4NP_001256365.1 FRQ1 72..212 CDD:444056
PTZ00169 253..511 CDD:240302 69/274 (25%)
Blue background indicates that the domain is not in the aligned region.

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