DRSC/TRiP Functional Genomics Resources

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Protein Alignment PMP34 and T09F3.2

DIOPT Version :9

Sequence 1:NP_001246615.1 Gene:PMP34 / 38532 FlyBaseID:FBgn0052250 Length:314 Species:Drosophila melanogaster
Sequence 2:NP_496236.1 Gene:T09F3.2 / 174602 WormBaseID:WBGene00011662 Length:384 Species:Caenorhabditis elegans


Alignment Length:395 Identity:82/395 - (20%)
Similarity:136/395 - (34%) Gaps:138/395 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly    17 VHAVSGAAGGCIAMSTFYPLDTVRSRLQLEEAGDVR-------------------STRQ------ 56
            :|.:.||.||....:...||:.|::|:|.....|.:                   ||:.      
 Worm     9 IHFIGGAVGGTTGTAITCPLEVVKTRMQSSRGLDAQSGPSTSSGSNSSKSSTSSSSTKSNGIFKS 73

  Fly    57 ----------------------------------------------------------------- 56
                                                                             
 Worm    74 VVSQRNGFGSNFRGGQLALERIFNNGSLAALSKANLFNQFQNPSTTSLVQYCVRNLSTSSTPPQP 138

  Fly    57 ---------VIK---EIVLGEGFQSLYRGLGPVLQSLCISNFVYFYTFHALKAVASGGS---PSQ 106
                     |||   :::..||..:||:||.|.|..:..|..|||||:...|...:...   |  
 Worm   139 PTAARRGTIVIKYITQVIKTEGIGALYKGLIPNLVGVAPSKAVYFYTYSTSKRFWNESEVLIP-- 201

  Fly   107 HSALKDLLLGSIAGIINVLTTTPFWVVNTRLRMRNVAGTSDEVNKHYKNLLEGLKYVAEKEGIAG 171
            :||:..::....||.:......|.|:|.|||          ::::.:..:.:.:|.|..:||..|
 Worm   202 NSAIVHMVSAGSAGFVAASAVNPIWLVKTRL----------QLHQGHIGIWQMIKRVYHREGFKG 256

  Fly   172 LWSGTIPSLMLVSNPALQFMMYEMLKRNIMRFTGGEMGS-----LSFFFIGAIAKAFATVLTYPL 231
            .:.|...|...||...:||.:||.. |.::.....||..     |:|...|..||..|.|:.||.
 Worm   257 FYKGVTASYAGVSETMIQFCIYEYF-RGVLLSDANEMDKRKMDFLNFMVAGGSAKFIACVVAYPH 320

  Fly   232 QLVQTKQRHRSKESDSKPSTSAGSTPRTESTLELMISILQHQGIRGLFRGLEAKILQTVLTAALM 296
            ::|:|:.|..:.:|.....|               :..|..:|...::|||..::::||...|:.
 Worm   321 EVVRTRLREETGKSRGFFKT---------------LYQLYKEGYPAMYRGLSVQLMRTVPNTAIT 370

  Fly   297 FMAYE 301
            ...||
 Worm   371 MGTYE 375

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PMP34NP_001246615.1 Mito_carr 15..96 CDD:278578 30/180 (17%)
Mito_carr 105..202 CDD:278578 24/96 (25%)
Mito_carr 214..303 CDD:278578 22/88 (25%)
T09F3.2NP_496236.1 Mito_carr <137..196 CDD:278578 18/58 (31%)
Mito_carr 201..288 CDD:278578 25/99 (25%)
Mito_carr 299..377 CDD:278578 24/92 (26%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG4266
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG53601
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
43.820

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