DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment PMP34 and slc25a43

DIOPT Version :10

Sequence 1:NP_728982.1 Gene:PMP34 / 38532 FlyBaseID:FBgn0052250 Length:314 Species:Drosophila melanogaster
Sequence 2:XP_002934585.2 Gene:slc25a43 / 100485727 XenbaseID:XB-GENE-6258507 Length:342 Species:Xenopus tropicalis


Alignment Length:274 Identity:66/274 - (24%)
Similarity:115/274 - (41%) Gaps:41/274 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 PSKLSQVLSYQNFV--------------HAVSGAAGGCIAMSTFYPLDTVRSRLQLEEAGD--VR 52
            |....|:.:|:.|.              ..|||...|.:|....||.|.|::||.::.:.:  .|
 Frog    80 PYSAVQLAAYRRFTLLFMDDLGRISKWQAIVSGGLAGVVAAVVIYPTDIVKTRLIVQNSLEPTYR 144

  Fly    53 STRQVIKEIVLGEGFQSLYRGLG-PVLQSLCISNFVYFYTFHALKAVASGG---SPSQHSALKDL 113
            .....:..|...|||:|||||:. .||.::..|..::|......:.....|   ||.||.|    
 Frog   145 GIIHALCSIYYQEGFRSLYRGISLTVLGAIPFSASLFFMNISLDRIWQEPGVCLSPLQHFA---- 205

  Fly   114 LLGSIAGIINVLTTTPFWVVNTRLR-----MRNVAGTSDEVNKHYKNLLEGLKYVAEKEGIAGLW 173
             .|.:|..:....:.||..|..:::     :.:..|    |:.|:..:|...:.:.:.:|:..||
 Frog   206 -NGCLAAAVAQTMSFPFETVKRKMQAQSQFLPHCGG----VDVHFNGMLNCFRQIVKTKGVLSLW 265

  Fly   174 SG-TIPSLMLVSNPALQFMMYEMLKRNIMRFTGGEMGSLSFFFIGAIAKAFATVLTYPLQLVQTK 237
            :| |...|.:|....|.|..||..||..:...|..:..|.:.....:.::..     |.:|.:.:
 Frog   266 NGLTANILKVVPYFGLMFSTYECCKRFCLYQNGYIISPLGYQLTPGVDQSLR-----PQELQELR 325

  Fly   238 QRHRSKE-SDSKPS 250
            :..|:|: :..|||
 Frog   326 KFLRAKDFAARKPS 339

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PMP34NP_728982.1 Mito_carr 15..96 CDD:395101 26/97 (27%)
Mito_carr 105..202 CDD:395101 25/102 (25%)
Mito_carr 214..303 CDD:395101 7/38 (18%)
slc25a43XP_002934585.2 PTZ00169 17..274 CDD:240302 49/202 (24%)

Return to query results.
Submit another query.