DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment PMP34 and slc25a17

DIOPT Version :9

Sequence 1:NP_001246615.1 Gene:PMP34 / 38532 FlyBaseID:FBgn0052250 Length:314 Species:Drosophila melanogaster
Sequence 2:NP_001092731.2 Gene:slc25a17 / 100093708 ZFINID:ZDB-GENE-070620-4 Length:317 Species:Danio rerio


Alignment Length:305 Identity:149/305 - (48%)
Similarity:200/305 - (65%) Gaps:12/305 - (3%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 KLSQVLSYQNFVHAVSGAAGGCIAMSTFYPLDTVRSRLQLEEAGDVRSTRQVIKEIVLGEGFQSL 70
            ||..|.||::.||||:||.|...||:.|:||||.|.|||::|....:||..::.||:..||..:.
Zfish     7 KLMDVFSYESLVHAVAGAMGSVTAMTVFFPLDTARLRLQVDEKRKAKSTPAILSEIIKEEGLLAP 71

  Fly    71 YRGLGPVLQSLCISNFVYFYTFHALKAVASGGSPSQHSALKDLLLGSIAGIINVLTTTPFWVVNT 135
            |||..||:.|||.|||||||.||:|||....|..|  :|.:||::|..||::|||.|||.|||||
Zfish    72 YRGWFPVICSLCCSNFVYFYCFHSLKATWLQGQRS--TAGRDLIIGIAAGVVNVLVTTPLWVVNT 134

  Fly   136 RLRMRNVAGTSDEVN-KHYKNLLEGLKYVAEKEGIAGLWSGTIPSLMLVSNPALQFMMYEMLKRN 199
            ||:::.....::::. .||..:.:....:..:||:..||:||.|||:||.|||:|||:||.|||.
Zfish   135 RLKLQGAKFRNEDIQPTHYNGIKDAFVQIMRQEGVGALWNGTFPSLLLVLNPAVQFMIYEGLKRQ 199

  Fly   200 IMRFTGGEMGSLSFFFIGAIAKAFATVLTYPLQLVQTKQR---HRSKESDSKPSTSAGSTPRTES 261
            |:|....|:.|:..|.|||:|||.||.:|||||.||:..|   |......|:...|      ..|
Zfish   200 ILRGVHRELSSVEVFLIGAVAKAVATTITYPLQTVQSVLRFGQHGQPAGQSRLLNS------LRS 258

  Fly   262 TLELMISILQHQGIRGLFRGLEAKILQTVLTAALMFMAYEKIAGT 306
            .:.|:|:.::..||.|||:|||||:|||||||||||:.|||||.|
Zfish   259 VMYLLINRVRKWGILGLFKGLEAKLLQTVLTAALMFLLYEKIAST 303

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PMP34NP_001246615.1 Mito_carr 15..96 CDD:278578 42/80 (53%)
Mito_carr 105..202 CDD:278578 45/97 (46%)
Mito_carr 214..303 CDD:278578 46/91 (51%)
slc25a17NP_001092731.2 Mito_carr 17..101 CDD:278578 45/83 (54%)
Mito_carr 104..202 CDD:278578 45/99 (45%)
Mito_carr 207..300 CDD:278578 48/98 (49%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 99 1.000 Domainoid score I7037
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H4637
Inparanoid 1 1.050 263 1.000 Inparanoid score I3076
OMA 1 1.010 - - QHG53601
OrthoDB 1 1.010 - - D1186395at2759
OrthoFinder 1 1.000 - - FOG0007252
OrthoInspector 1 1.000 - - otm25801
orthoMCL 1 0.900 - - OOG6_103707
Panther 1 1.100 - - O PTHR45939
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R5749
SonicParanoid 1 1.000 - - X6128
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
1313.010

Return to query results.
Submit another query.