DRSC/TRiP Functional Genomics Resources

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Protein Alignment dyl and col6a4a

DIOPT Version :9

Sequence 1:NP_647890.2 Gene:dyl / 38531 FlyBaseID:FBgn0066365 Length:611 Species:Drosophila melanogaster
Sequence 2:XP_017207020.1 Gene:col6a4a / 564005 ZFINID:ZDB-GENE-041111-303 Length:2568 Species:Danio rerio


Alignment Length:627 Identity:119/627 - (18%)
Similarity:175/627 - (27%) Gaps:260/627 - (41%)


- Green bases have known domain annotations that are detailed below.


  Fly    65 TNDVSEEAWPLASTNDSPQIKHLQVQCEKTHMRVNIEFDR---PFYGMIFSKGFYSDPH------ 120
            :..:|||:|...       |..|....:|  :|:..|..|   ..:..::.|.||.:.:      
Zfish  1193 SESISEESWITV-------IAFLLNVVDK--LRIGPELFRVGIAQFSSVYQKEFYMNEYKDADGV 1248

  Fly   121 ------CVHLKPGT---GHLSATFEIFLNSCGMTSSANHNAAGYGAPTPSGSYVENTIIIQ---Y 173
                  ...:|.||   ..||...|.|....|....:       |.|       :|.::|.   .
Zfish  1249 KSAIRRITQIKEGTLIGKALSNVVEFFQEDKGSRKQS-------GVP-------QNLVLITDGVS 1299

  Fly   174 DPYVQEVWDQARKLRCTWYDFYEKAVTF-----------RPFQV---DMLHAVTANFLGDNL--- 221
            ...|.|..||.|.|....:.....||:.           |.|:|   :.|:..||.|: |.|   
Zfish  1300 SDRVNEAADQLRNLGINVFAIGIGAVSLQQLSYIAGSPDRLFKVQNFNYLNLTTATFV-DALCVP 1363

  Fly   222 ----QCWMQIQVGKG----------------------------PWASEVSGIVKIGQ-------- 246
                |....|.:|.|                            ...|||..:..|.:        
Zfish  1364 LPLAQASCTIDIGIGFDNSRTSSSSRSIFRDQMKLQTYLPEIIRSISEVHNLCCITKPTIKTNIG 1428

  Fly   247 ----------------------TMTMVLAIKDDEN-KF-DMLVRN---------------CVAHD 272
                                  .:..|:|::..:: || ::|:|:               .:..|
Zfish  1429 FRLVDATGKRLDDFSFEEYDVGVLNKVMALQTSQSLKFNNLLLRSFEEKFRASNSFVKVLIIFTD 1493

  Fly   273 GKRAPIQLVDQNGCVVRPKIMSKFQKIKNFGPSA-------------SVVSFAYFQAFKFPDSMN 324
            |...|::           .::|....::..|..|             .:....:.:..::...::
Zfish  1494 GLDEPVE-----------NLLSTVNSLRTNGVKALLTVALDGYKSTTDLQRLEFGRGLRYKQLLS 1547

  Fly   325 VHFQCVIQV-------------CRYNCPEPKC--------------GPGLPG------------- 349
            :..|.|..|             |...|   ||              ..||||             
Zfish  1548 IGMQSVASVMQKEIDNIASRECCNVAC---KCSGHEGSRGFQGLPGSKGLPGRRGNSGYPGEEGG 1609

  Fly   350 -GEYGLPQIGANGLSEEYGPPEAYERNDFALGGPGVLPPAAYPDPRHPASDATGAYSENQPDVVP 413
             ||.|||  |.||.....|.|          |..|:.....|       ....|...:|..|.|.
Zfish  1610 HGERGLP--GLNGTRGNQGCP----------GRRGLKGGRGY-------RGENGEEGDNGLDGVD 1655

  Fly   414 SPQAQTSAAVPTADSGTVSGPASSQSP-QPQPTG-SNELGLPPP----PLPGQSGQYSTVK-RKD 471
            ..|.:|         |....|.....| .|.||| |...|.|..    ..||.||..:..: ||.
Zfish  1656 GEQGKT---------GAPGSPGERGDPGNPGPTGISGSSGSPGQRGLRGDPGNSGLDNNARGRKG 1711

  Fly   472 DLSAGGNLVSLG-----------GRP-----RSVEGLDDLRG 497
            |..:.|.....|           |||     |...||...||
Zfish  1712 DAGSAGMQGDPGPDGLAGQSGENGRPGQSGRRGTAGLPGPRG 1753

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
dylNP_647890.2 ZP 90..345 CDD:214579 63/411 (15%)
PHA03378 <339..494 CDD:223065 50/205 (24%)
col6a4aXP_017207020.1 vWA_collagen 35..198 CDD:238749
VWA 230..>362 CDD:278519
VWA 416..588 CDD:278519
VWA 622..784 CDD:278519
VWA 807..975 CDD:278519
VWA 995..1164 CDD:278519
vWA_collagen 1184..1351 CDD:238749 37/180 (21%)
VWA <1451..1548 CDD:214621 12/107 (11%)
Collagen 1584..1676 CDD:189968 26/119 (22%)
Collagen 1659..1739 CDD:189968 23/88 (26%)
Collagen 1786..1840 CDD:189968
Collagen 1842..1912 CDD:189968
VWA 1943..2107 CDD:278519
VWA 2153..2325 CDD:278519
Kunitz_BPTI 2438..2490 CDD:278443
Kunitz_BPTI 2510..2561 CDD:278443
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

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